RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TWIST1Q15672 202 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 KLF17Q5JT82 389 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-230ENST00000495090 ZNF491Q8N8L2 437 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 RNF125Q96EQ8 232 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 C18orf15Q96N68 181 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 RNF5Q99942 180 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 KNTC1P50748 2209 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 TMEM178BH3BS89 294 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 CD40P25942 277 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 TM4SF20Q53R12 229 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 Q6ZS92 163 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 C1orf210Q8IVY1 113 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 RNF185Q96GF1 192 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 ZNF479Q96JC4 524 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 NHP2Q9NX24 153 aaKnown RBP7.6□□□□□ -1.19
SYNE1-230ENST00000495090 KAAG1Q9UBP8 84 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 INTS1Q8N201 2190 aaKnown RBP7.59□□□□□ -1.19
SYNE1-230ENST00000495090 A0A1B0GWB2 263 aa7.59□□□□□ -1.19
SYNE1-230ENST00000495090 C17orf100A8MU93 164 aa7.59□□□□□ -1.19
SYNE1-230ENST00000495090 K7EIM0 57 aa7.59□□□□□ -1.19
SYNE1-230ENST00000495090 M0R3E3 92 aa7.59□□□□□ -1.19
SYNE1-230ENST00000495090 LOXP28300 417 aaPredicted RBP7.59□□□□□ -1.19
SYNE1-230ENST00000495090 LEPP41159 167 aa7.59□□□□□ -1.19
SYNE1-230ENST00000495090 TCTAP57738 103 aa7.59□□□□□ -1.19
SYNE1-230ENST00000495090 FXYD7P58549 80 aa7.59□□□□□ -1.19
SYNE1-230ENST00000495090 FDCSPQ8NFU4 85 aa7.59□□□□□ -1.19
SYNE1-230ENST00000495090 PRR25Q96S07 402 aa7.59□□□□□ -1.19
SYNE1-230ENST00000495090 RAB1BQ9H0U4 201 aa7.59□□□□□ -1.19
SYNE1-230ENST00000495090 NPIPB5A8MRT5 1133 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 K7ERJ3 54 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 CCL8P80075 99 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 WFDC2Q14508 124 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 ARPC1AQ92747 370 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 ZNF48Q96MX3 618 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-230ENST00000495090 IGHV3-72A0A0B4J1Y9 119 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 SMKR1H3BMG3 65 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 IGLV1-47P01700 117 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 PRSS1P07477 247 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 EGR2P11161 476 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-230ENST00000495090 CD59P13987 128 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 CNTFRP26992 372 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 C12orf74Q32Q52 190 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 ZC2HC1BQ5TFG8 222 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 CCDC144NLQ6NUI1 221 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 Q8N8P6 123 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 PSMG3-AS1Q96PY0 264 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 ASCL2Q99929 193 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 SPAG8Q99932 426 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-230ENST00000495090 PRO0461Q9UI25 63 aa7.58□□□□□ -1.2
SYNE1-230ENST00000495090 TMSB15BA0A087X1C1 80 aa7.57□□□□□ -1.2
SYNE1-230ENST00000495090 IGHV1-3A0A0C4DH29 117 aa7.57□□□□□ -1.2
SYNE1-230ENST00000495090 TNFRSF6BO95407 300 aa7.57□□□□□ -1.2
SYNE1-230ENST00000495090 IL4P05112 153 aa7.57□□□□□ -1.2
SYNE1-230ENST00000495090 APELAP0DMC3 54 aa7.57□□□□□ -1.2
SYNE1-230ENST00000495090 RRN3P1Q2M238 152 aa7.57□□□□□ -1.2
SYNE1-230ENST00000495090 LCNL1Q6ZST4 164 aa7.57□□□□□ -1.2
SYNE1-230ENST00000495090 MTURNQ8N3F0 131 aa7.57□□□□□ -1.2
SYNE1-230ENST00000495090 TTC9CQ8N5M4 171 aa7.57□□□□□ -1.2
SYNE1-230ENST00000495090 ATP6V0E2Q8NHE4 81 aa7.57□□□□□ -1.2
SYNE1-230ENST00000495090 IGLV2-18A0A075B6J9 118 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 TMEM8BA6NDV4 472 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 GAGE13Q4V321 117 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 WFDC3Q8IUB2 231 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 FOXC2Q99958 501 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 CTSZQ9UBR2 303 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 NBEAQ8NFP9 2946 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 RPL7P18124 248 aaKnown RBP7.56□□□□□ -1.2
SYNE1-230ENST00000495090 PLNP26678 52 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 ADIPOQQ15848 244 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 LYPD2Q6UXB3 125 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 TMEM108Q6UXF1 575 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 GTSCR1Q86UQ5 136 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 ZNF575Q86XF7 245 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 MRAP2Q96G30 205 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 TTTY13Q9BZ97 58 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 FAM215AQ9Y5M1 114 aa7.56□□□□□ -1.2
SYNE1-230ENST00000495090 TRBV7-3A0A075B6L6 115 aa7.55□□□□□ -1.2
SYNE1-230ENST00000495090 A0A087WX48 190 aa7.55□□□□□ -1.2
SYNE1-230ENST00000495090 H3BMG7 143 aa7.55□□□□□ -1.2
SYNE1-230ENST00000495090 BUB1B-PAK6H3BSN5 160 aa7.55□□□□□ -1.2
SYNE1-230ENST00000495090 LPAL2Q16609 132 aa7.55□□□□□ -1.2
SYNE1-230ENST00000495090 ETDBQ3ZM63 59 aa7.55□□□□□ -1.2
SYNE1-230ENST00000495090 TMEM158Q8WZ71 300 aa7.55□□□□□ -1.2
SYNE1-230ENST00000495090 ARRDC1-AS1Q9H2J1 176 aa7.55□□□□□ -1.2
SYNE1-230ENST00000495090 FBXL15Q9H469 300 aa7.55□□□□□ -1.2
SYNE1-230ENST00000495090 CADP27708 2225 aa7.55□□□□□ -1.2
SYNE1-230ENST00000495090 IGKV2-40A0A087WW87 121 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-230ENST00000495090 C16orf97H3BN30 126 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 IGKV2D-40P01614 121 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-230ENST00000495090 RAB9AP51151 201 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 CKS1BP61024 79 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 SCGB2A2Q13296 93 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 PRSS33Q8NF86 280 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 SPXQ9BT56 116 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 CELSR3Q9NYQ7 3312 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 TRAV12-1A0A0B4J245 112 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 TRAV40A0A0B4J280 105 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 NCBP2LA6PVI3 153 aaKnown RBP7.54□□□□□ -1.2
SYNE1-230ENST00000495090 FABP5P3A8MUU1 101 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms