RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 GNG13Q9P2W3 67 aa12.76□□□□□ -0.37
LIME1-208ENST00000493265 ZNF705DP0CH99 300 aaPredicted RBP12.75□□□□□ -0.37
LIME1-208ENST00000493265 ZNF705BP0CI00 300 aaPredicted RBP12.75□□□□□ -0.37
LIME1-208ENST00000493265 IFITM2Q01629 132 aa12.75□□□□□ -0.37
LIME1-208ENST00000493265 ACTL10Q5JWF8 245 aa12.75□□□□□ -0.37
LIME1-208ENST00000493265 CST9LP1Q5W188 147 aa12.75□□□□□ -0.37
LIME1-208ENST00000493265 SUN5Q8TC36 379 aa12.75□□□□□ -0.37
LIME1-208ENST00000493265 SORL1Q92673 2214 aa12.75□□□□□ -0.37
LIME1-208ENST00000493265 TUBA4BQ9H853 241 aa12.75□□□□□ -0.37
LIME1-208ENST00000493265 SRD5A3Q9H8P0 318 aa12.75□□□□□ -0.37
LIME1-208ENST00000493265 OTORQ9NRC9 128 aa12.75□□□□□ -0.37
LIME1-208ENST00000493265 YTHDF2Q9Y5A9 579 aaKnown RBP12.75□□□□□ -0.37
LIME1-208ENST00000493265 COL7A1Q02388 2944 aa12.74□□□□□ -0.37
LIME1-208ENST00000493265 TRAV1-1A0A0B4J248 108 aa12.74□□□□□ -0.37
LIME1-208ENST00000493265 PRAC2D3DTV9 90 aa12.74□□□□□ -0.37
LIME1-208ENST00000493265 PAGE4O60829 102 aa12.74□□□□□ -0.37
LIME1-208ENST00000493265 IGKV3-20P01619 116 aa12.74□□□□□ -0.37
LIME1-208ENST00000493265 GDF5OSQ5U4N7 250 aa12.74□□□□□ -0.37
LIME1-208ENST00000493265 CITED4Q96RK1 184 aa12.74□□□□□ -0.37
LIME1-208ENST00000493265 FAM74A7A6NL05 159 aa12.73□□□□□ -0.37
LIME1-208ENST00000493265 K7EIL1 84 aa12.73□□□□□ -0.37
LIME1-208ENST00000493265 SLC25A5P05141 298 aaKnown RBP12.73□□□□□ -0.37
LIME1-208ENST00000493265 SUMO1P63165 101 aaKnown RBP12.73□□□□□ -0.37
LIME1-208ENST00000493265 DEFB121Q5J5C9 76 aa12.73□□□□□ -0.37
LIME1-208ENST00000493265 EBLN2Q6P2I7 272 aa12.73□□□□□ -0.37
LIME1-208ENST00000493265 LYPD1Q8N2G4 141 aa12.73□□□□□ -0.37
LIME1-208ENST00000493265 CMTM2Q8TAZ6 248 aa12.73□□□□□ -0.37
LIME1-208ENST00000493265 CLEC5AQ9NY25 188 aa12.73□□□□□ -0.37
LIME1-208ENST00000493265 PRELID1Q9Y255 219 aa12.73□□□□□ -0.37
LIME1-208ENST00000493265 GGTLC3B5MD39 225 aa12.72□□□□□ -0.37
LIME1-208ENST00000493265 IGHV4-30-4P0DP06 118 aa12.72□□□□□ -0.37
LIME1-208ENST00000493265 RPL35AP18077 110 aaKnown RBP12.72□□□□□ -0.37
LIME1-208ENST00000493265 CSN1S1P47710 185 aa12.72□□□□□ -0.37
LIME1-208ENST00000493265 GNG5P63218 68 aa12.72□□□□□ -0.37
LIME1-208ENST00000493265 HIST1H1AQ02539 215 aaPredicted RBP12.72□□□□□ -0.37
LIME1-208ENST00000493265 HAGHQ16775 308 aa12.72□□□□□ -0.37
LIME1-208ENST00000493265 STHQ8IWL8 128 aa12.72□□□□□ -0.37
LIME1-208ENST00000493265 OR4B1Q8NGF8 309 aa12.72□□□□□ -0.37
LIME1-208ENST00000493265 FAM110AQ9BQ89 295 aa12.72□□□□□ -0.37
LIME1-208ENST00000493265 DNAH9Q9NYC9 4486 aa12.72□□□□□ -0.37
LIME1-208ENST00000493265 IGKV2-40A0A087WW87 121 aaPredicted RBP12.71□□□□□ -0.37
LIME1-208ENST00000493265 A0A1W2PRE2 83 aa12.71□□□□□ -0.37
LIME1-208ENST00000493265 IGKV2D-40P01614 121 aaPredicted RBP12.71□□□□□ -0.37
LIME1-208ENST00000493265 ATP5G3P48201 142 aa12.71□□□□□ -0.37
LIME1-208ENST00000493265 PPT1P50897 306 aa12.71□□□□□ -0.37
LIME1-208ENST00000493265 RAB14P61106 215 aa12.71□□□□□ -0.37
LIME1-208ENST00000493265 FOXI2Q6ZQN5 318 aa12.71□□□□□ -0.37
LIME1-208ENST00000493265 ZNF767PQ75MW2 155 aa12.71□□□□□ -0.37
LIME1-208ENST00000493265 SAV1Q9H4B6 383 aaPredicted RBP12.71□□□□□ -0.37
LIME1-208ENST00000493265 A0A0J9YX75 114 aa12.7□□□□□ -0.38
LIME1-208ENST00000493265 IFNA1P01562 189 aa12.7□□□□□ -0.38
LIME1-208ENST00000493265 NMBP08949 121 aa12.7□□□□□ -0.38
LIME1-208ENST00000493265 OR8A1Q8NGG7 326 aa12.7□□□□□ -0.38
LIME1-208ENST00000493265 OR10J6PQ8NGY7 276 aa12.7□□□□□ -0.38
LIME1-208ENST00000493265 MRPL53Q96EL3 112 aaKnown RBP12.7□□□□□ -0.38
LIME1-208ENST00000493265 MANBALQ9NQG1 85 aa12.7□□□□□ -0.38
LIME1-208ENST00000493265 ERCC8Q13216 396 aa12.69□□□□□ -0.38
LIME1-208ENST00000493265 GOLT1AQ6ZVE7 132 aa12.69□□□□□ -0.38
LIME1-208ENST00000493265 C5orf17Q8NAS9 161 aa12.69□□□□□ -0.38
LIME1-208ENST00000493265 RXFP4Q8TDU9 374 aa12.69□□□□□ -0.38
LIME1-208ENST00000493265 RBMY1BA6NDE4 496 aaKnown RBP12.68□□□□□ -0.38
LIME1-208ENST00000493265 RBMY1EA6NEQ0 496 aaKnown RBP12.68□□□□□ -0.38
LIME1-208ENST00000493265 DIRC3C9JPN6 131 aa12.68□□□□□ -0.38
LIME1-208ENST00000493265 C11orf94C9JXX5 98 aa12.68□□□□□ -0.38
LIME1-208ENST00000493265 H3BMM0 161 aa12.68□□□□□ -0.38
LIME1-208ENST00000493265 RBMY1DP0C7P1 496 aaKnown RBP12.68□□□□□ -0.38
LIME1-208ENST00000493265 HLA-DRB4P13762 266 aa12.68□□□□□ -0.38
LIME1-208ENST00000493265 CNN1P51911 297 aaKnown RBP12.68□□□□□ -0.38
LIME1-208ENST00000493265 PPP1R14DQ9NXH3 145 aa12.68□□□□□ -0.38
LIME1-208ENST00000493265 EPDR1Q9UM22 224 aa12.68□□□□□ -0.38
LIME1-208ENST00000493265 HLA-DRB4X5D2U9 266 aa12.68□□□□□ -0.38
LIME1-208ENST00000493265 DUSP14O95147 198 aaKnown RBP12.67□□□□□ -0.38
LIME1-208ENST00000493265 FXYD7P58549 80 aa12.67□□□□□ -0.38
LIME1-208ENST00000493265 LYPD6BQ8NI32 183 aa12.67□□□□□ -0.38
LIME1-208ENST00000493265 SGK494Q96LW2 274 aa12.67□□□□□ -0.38
LIME1-208ENST00000493265 RARRES2Q99969 163 aa12.67□□□□□ -0.38
LIME1-208ENST00000493265 VGLL1Q99990 258 aa12.67□□□□□ -0.38
LIME1-208ENST00000493265 NKX6-2Q9C056 277 aaPredicted RBP12.67□□□□□ -0.38
LIME1-208ENST00000493265 LOC102724200A0A096LPH7 203 aaPredicted RBP12.66□□□□□ -0.38
LIME1-208ENST00000493265 TCRAP04437 139 aa12.66□□□□□ -0.38
LIME1-208ENST00000493265 FRMD6-AS1P0C7T7 363 aa12.66□□□□□ -0.38
LIME1-208ENST00000493265 BCL2P10415 239 aa12.66□□□□□ -0.38
LIME1-208ENST00000493265 TRPT1Q86TN4 253 aaKnown RBP12.66□□□□□ -0.38
LIME1-208ENST00000493265 ASCL2Q99929 193 aa12.66□□□□□ -0.38
LIME1-208ENST00000493265 ARL2-SNX15V9GYD0 113 aa12.66□□□□□ -0.38
LIME1-208ENST00000493265 TENM3Q9P273 2699 aa12.66□□□□□ -0.38
LIME1-208ENST00000493265 LOC102723971A0A1B0GUV8 181 aa12.65□□□□□ -0.38
LIME1-208ENST00000493265 RBFOX3A6NFN3 312 aa12.65□□□□□ -0.38
LIME1-208ENST00000493265 PEX7O00628 323 aa12.65□□□□□ -0.38
LIME1-208ENST00000493265 TOR2AQ5JU69 321 aa12.65□□□□□ -0.38
LIME1-208ENST00000493265 TMEM78Q5T7P6 136 aa12.65□□□□□ -0.38
LIME1-208ENST00000493265 EIF5A2Q9GZV4 153 aaKnown RBP12.65□□□□□ -0.38
LIME1-208ENST00000493265 AGPAT4-IT1Q9H0P7 198 aa12.65□□□□□ -0.38
LIME1-208ENST00000493265 VAX2Q9UIW0 290 aa12.65□□□□□ -0.38
LIME1-208ENST00000493265 TRAV8-1A0A0A6YYK1 113 aa12.64□□□□□ -0.39
LIME1-208ENST00000493265 SCO2A0A1W2PP80 73 aa12.64□□□□□ -0.39
LIME1-208ENST00000493265 NPIPB6E9PJ23 425 aa12.64□□□□□ -0.39
LIME1-208ENST00000493265 MEF2BQ02080 365 aaPredicted RBP12.64□□□□□ -0.39
LIME1-208ENST00000493265 CCDC28AQ8IWP9 274 aa12.64□□□□□ -0.39
LIME1-208ENST00000493265 Q8TAT8 98 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms