RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 SERF2P84101 59 aa11.81□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 Q8NAQ8 132 aa11.81□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 OR11H4Q8NGC9 324 aa11.81□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 OR10J6PQ8NGY7 276 aa11.81□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 GNPNAT1Q96EK6 184 aaPredicted RBP11.81□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 AAMDCQ9H7C9 122 aa11.81□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 PPP1R14DQ9NXH3 145 aa11.81□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 X6R8D5 127 aa11.81□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 HMSDA8MTL9 139 aa11.8□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 M0R2Z0 102 aa11.8□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 EIF3GO75821 320 aaKnown RBP eCLIP11.8□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 JTBO76095 146 aa11.8□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 MBP02144 154 aa11.8□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 ZNF345Q14585 488 aa11.8□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 SPINK13Q1W4C9 94 aa11.8□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 ZFAND6Q6FIF0 208 aa11.8□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 EXOC3-AS1Q8N2X6 119 aa11.8□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 KCNRGQ8N5I3 272 aa11.8□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 PHYHIPLQ96FC7 376 aa11.8□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 IGHV4-28A0A0C4DH34 117 aa11.79□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 M0R3E3 92 aa11.79□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 CDC34P49427 236 aaPredicted RBP11.79□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 CASC10Q5T4H9 136 aa11.79□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 ZNF705AQ6ZN79 300 aaPredicted RBP11.79□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 PQLC2Q6ZP29 291 aa11.79□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 ST6GAL2Q96JF0 529 aa11.79□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 IGF2BP2-AS1Q96M15 143 aa11.79□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 ARPC5LQ9BPX5 153 aa11.79□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 CYTL1Q9NRR1 136 aa11.79□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 GOLT1BQ9Y3E0 138 aa11.79□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 IGHV3OR16-12A0A075B7B8 117 aa11.78□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 DEFB4AO15263 64 aa11.78□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 ICAM4Q14773 271 aa11.78□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 RPP25LQ8N5L8 163 aaKnown RBP11.78□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 NEU1Q99519 415 aa11.78□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 DNAH7Q8WXX0 4024 aa11.78□□□□□ -0.52
MSH5-SAPCD1-206ENST00000491552 A0A0D9SG52 128 aa11.77□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 NPIPB6E9PJ23 425 aa11.77□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 HMGB3O15347 200 aaKnown RBP11.77□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 CRXO43186 299 aaPredicted RBP11.77□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 INSP01308 110 aa11.77□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 RBMY1A1P0DJD3 496 aaKnown RBP11.77□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 RBMY1CP0DJD4 496 aa11.77□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 RBMY1FQ15415 496 aaKnown RBP11.77□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 BAP18Q8IXM2 172 aa11.77□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 C1orf158Q8N1D5 194 aa11.77□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 LYPD1Q8N2G4 141 aa11.77□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 hCG_2014768A0A024R1R8 64 aa11.76□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 STAG3L2P0CL84 134 aa11.76□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 STAG3L3P0CL85 134 aa11.76□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 CDKN1BP46527 198 aa11.76□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 RANP62826 216 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 TCTE3Q8IZS6 198 aa11.76□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 RAB24Q969Q5 203 aa11.76□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 ACTR3CQ9C0K3 210 aaPredicted RBP11.76□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 Q9H3A6 140 aa11.76□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 TRAV12-2A0A075B6T6 113 aa11.75□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 SMIM9A6NGZ8 99 aa11.75□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 BCL2L11O43521 198 aa11.75□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 ARL14EPLP0DKL9 152 aa11.75□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 TSPOP30536 169 aa11.75□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 PMS2P11Q13670 270 aa11.75□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 ODF3Q96PU9 254 aa11.75□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 TMEM208Q9BTX3 173 aa11.75□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 IGKV2-40A0A087WW87 121 aaPredicted RBP11.74□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 KANTRA0A1W2PQU2 76 aa11.74□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 CXorf65A6NEN9 183 aa11.74□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 IGKV2D-40P01614 121 aaPredicted RBP11.74□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 CT45A10P0DMU9 189 aa11.74□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 LEPP41159 167 aa11.74□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 CSN1S1P47710 185 aa11.74□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 ERCC8Q13216 396 aa11.74□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 AKR1C8PQ5T2L2 129 aa11.74□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 C11orf45Q8TAV5 145 aa11.74□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 HBE1P02100 147 aa11.73□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 LINC00477Q96M19 166 aa11.73□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 ZNF471Q9BX82 626 aaPredicted RBP11.73□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 OTORQ9NRC9 128 aa11.73□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 CTXND1A0A1B0GTU2 59 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 TMEM189A5PLL7 270 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 PFDN1O60925 122 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 CXorf1O96002 111 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 GCHFRP30047 84 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 NANOS2P60321 138 aaKnown RBP11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 RRN3P1Q2M238 152 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 FAM74A1Q5RGS3 127 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 C9orf47Q6ZRZ4 202 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 TMUB2Q71RG4 321 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 SSX7Q7RTT5 188 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 AKAP14Q86UN6 197 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 TMEM256Q8N2U0 113 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 AGPAT4-IT1Q9H0P7 198 aa11.72□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 PGPA6NDG6 321 aa11.71□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 C1QBP02746 253 aa11.71□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 KIR3DS1Q14943 382 aa11.71□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 ZNF726P1Q15940 193 aa11.71□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 TMEM78Q5T7P6 136 aa11.71□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 GFI1BQ5VTD9 330 aa11.71□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 SUN5Q8TC36 379 aa11.71□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 RXFP4Q8TDU9 374 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms