RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 DEFB1P60022 68 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 SUMO1P63165 101 aaKnown RBP9.09□□□□□ -0.95
SDC1-206ENST00000482879 ZNF124Q15973 351 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 CST9LP1Q5W188 147 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 DEFB125Q8N687 156 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 LYPD6BQ8NI32 183 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 CMTM2Q8TAZ6 248 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 RPUSD4Q96CM3 377 aaKnown RBP9.09□□□□□ -0.95
SDC1-206ENST00000482879 MRPL53Q96EL3 112 aaKnown RBP9.09□□□□□ -0.95
SDC1-206ENST00000482879 WFDC10AQ9H1F0 79 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 MANBALQ9NQG1 85 aa9.09□□□□□ -0.95
SDC1-206ENST00000482879 KNCNA6PVL3 124 aa9.08□□□□□ -0.96
SDC1-206ENST00000482879 IFNA1P01562 189 aa9.08□□□□□ -0.96
SDC1-206ENST00000482879 SLC25A5P05141 298 aaKnown RBP9.08□□□□□ -0.96
SDC1-206ENST00000482879 CSN1S1P47710 185 aa9.08□□□□□ -0.96
SDC1-206ENST00000482879 EBLN2Q6P2I7 272 aa9.08□□□□□ -0.96
SDC1-206ENST00000482879 RXFP4Q8TDU9 374 aa9.08□□□□□ -0.96
SDC1-206ENST00000482879 NKX6-2Q9C056 277 aaPredicted RBP9.08□□□□□ -0.96
SDC1-206ENST00000482879 AURKAIP1Q9NWT8 199 aaPredicted RBP9.08□□□□□ -0.96
SDC1-206ENST00000482879 ARL2-SNX15V9GYD0 113 aa9.08□□□□□ -0.96
SDC1-206ENST00000482879 GGTLC3B5MD39 225 aa9.07□□□□□ -0.96
SDC1-206ENST00000482879 PRAC2D3DTV9 90 aa9.07□□□□□ -0.96
SDC1-206ENST00000482879 F6UB75 175 aa9.07□□□□□ -0.96
SDC1-206ENST00000482879 PMS2P11Q13670 270 aa9.07□□□□□ -0.96
SDC1-206ENST00000482879 HAGHQ16775 308 aa9.07□□□□□ -0.96
SDC1-206ENST00000482879 ACTL10Q5JWF8 245 aa9.07□□□□□ -0.96
SDC1-206ENST00000482879 FOXI2Q6ZQN5 318 aa9.07□□□□□ -0.96
SDC1-206ENST00000482879 SAV1Q9H4B6 383 aaPredicted RBP9.07□□□□□ -0.96
SDC1-206ENST00000482879 RPH3ALQ9UNE2 315 aa9.07□□□□□ -0.96
SDC1-206ENST00000482879 ZNF705DP0CH99 300 aaPredicted RBP9.06□□□□□ -0.96
SDC1-206ENST00000482879 ZNF705BP0CI00 300 aaPredicted RBP9.06□□□□□ -0.96
SDC1-206ENST00000482879 ATP5G3P48201 142 aa9.06□□□□□ -0.96
SDC1-206ENST00000482879 GNG5P63218 68 aa9.06□□□□□ -0.96
SDC1-206ENST00000482879 GDF5OSQ5U4N7 250 aa9.06□□□□□ -0.96
SDC1-206ENST00000482879 C5orf17Q8NAS9 161 aa9.06□□□□□ -0.96
SDC1-206ENST00000482879 OR8A1Q8NGG7 326 aa9.06□□□□□ -0.96
SDC1-206ENST00000482879 CITED4Q96RK1 184 aa9.06□□□□□ -0.96
SDC1-206ENST00000482879 TUBA4BQ9H853 241 aa9.06□□□□□ -0.96
SDC1-206ENST00000482879 SRD5A3Q9H8P0 318 aa9.06□□□□□ -0.96
SDC1-206ENST00000482879 EPDR1Q9UM22 224 aa9.06□□□□□ -0.96
SDC1-206ENST00000482879 IGKV2-40A0A087WW87 121 aaPredicted RBP9.05□□□□□ -0.96
SDC1-206ENST00000482879 A0A0J9YX75 114 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 RBFOX3A6NFN3 312 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 DIRC3C9JPN6 131 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 C11orf94C9JXX5 98 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 H3BMM0 161 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 RGS13O14921 159 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 DUSP14O95147 198 aaKnown RBP9.05□□□□□ -0.96
SDC1-206ENST00000482879 IGKV2D-40P01614 121 aaPredicted RBP9.05□□□□□ -0.96
SDC1-206ENST00000482879 BCL2P10415 239 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 HLA-DRB4P13762 266 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 TAGLN2P37802 199 aaKnown RBP9.05□□□□□ -0.96
SDC1-206ENST00000482879 HIST1H1AQ02539 215 aaPredicted RBP9.05□□□□□ -0.96
SDC1-206ENST00000482879 CLLU1Q5K131 121 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 STHQ8IWL8 128 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 CCDC28AQ8IWP9 274 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 ARL6IP6Q8N6S5 226 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 OR4B1Q8NGF8 309 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 OR10J6PQ8NGY7 276 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 VAX2Q9UIW0 290 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 HLA-DRB4X5D2U9 266 aa9.05□□□□□ -0.96
SDC1-206ENST00000482879 LOC102723971A0A1B0GUV8 181 aa9.04□□□□□ -0.96
SDC1-206ENST00000482879 F6UZH7 168 aa9.04□□□□□ -0.96
SDC1-206ENST00000482879 K7EIL1 84 aa9.04□□□□□ -0.96
SDC1-206ENST00000482879 IGKV3-20P01619 116 aa9.04□□□□□ -0.96
SDC1-206ENST00000482879 IGHV4-30-4P0DP06 118 aa9.04□□□□□ -0.96
SDC1-206ENST00000482879 GOLT1AQ6ZVE7 132 aa9.04□□□□□ -0.96
SDC1-206ENST00000482879 RARRES2Q99969 163 aa9.04□□□□□ -0.96
SDC1-206ENST00000482879 TXNDC17Q9BRA2 123 aa9.04□□□□□ -0.96
SDC1-206ENST00000482879 PEX7O00628 323 aa9.03□□□□□ -0.96
SDC1-206ENST00000482879 TCRAP04437 139 aa9.03□□□□□ -0.96
SDC1-206ENST00000482879 RPL35AP18077 110 aaKnown RBP9.03□□□□□ -0.96
SDC1-206ENST00000482879 CNN1P51911 297 aaKnown RBP9.03□□□□□ -0.96
SDC1-206ENST00000482879 MEF2BQ02080 365 aaPredicted RBP9.03□□□□□ -0.96
SDC1-206ENST00000482879 ERCC8Q13216 396 aa9.03□□□□□ -0.96
SDC1-206ENST00000482879 DEFB121Q5J5C9 76 aa9.03□□□□□ -0.96
SDC1-206ENST00000482879 TOR2AQ5JU69 321 aa9.03□□□□□ -0.96
SDC1-206ENST00000482879 ZNF506Q5JVG8 444 aa9.03□□□□□ -0.96
SDC1-206ENST00000482879 HIST1H2BAQ96A08 127 aa9.03□□□□□ -0.96
SDC1-206ENST00000482879 FAM210AQ96ND0 272 aa9.03□□□□□ -0.96
SDC1-206ENST00000482879 VGLL1Q99990 258 aa9.03□□□□□ -0.96
SDC1-206ENST00000482879 TCEAL7Q9BRU2 100 aa9.03□□□□□ -0.96
SDC1-206ENST00000482879 ATG101Q9BSB4 218 aa9.03□□□□□ -0.96
SDC1-206ENST00000482879 EIF5A2Q9GZV4 153 aaKnown RBP9.03□□□□□ -0.96
SDC1-206ENST00000482879 DNAH3Q8TD57 4116 aa9.02□□□□□ -0.97
SDC1-206ENST00000482879 LOC102724200A0A096LPH7 203 aaPredicted RBP9.02□□□□□ -0.97
SDC1-206ENST00000482879 SERTM2A0A1B0GWG4 89 aa9.02□□□□□ -0.97
SDC1-206ENST00000482879 RBAKDNA6NC62 111 aa9.02□□□□□ -0.97
SDC1-206ENST00000482879 RBMY1BA6NDE4 496 aaKnown RBP9.02□□□□□ -0.97
SDC1-206ENST00000482879 RBMY1EA6NEQ0 496 aaKnown RBP9.02□□□□□ -0.97
SDC1-206ENST00000482879 NPIPB6E9PJ23 425 aa9.02□□□□□ -0.97
SDC1-206ENST00000482879 K7EQM0 130 aa9.02□□□□□ -0.97
SDC1-206ENST00000482879 RBMY1DP0C7P1 496 aaKnown RBP9.02□□□□□ -0.97
SDC1-206ENST00000482879 C9orf47Q6ZRZ4 202 aa9.02□□□□□ -0.97
SDC1-206ENST00000482879 TRPT1Q86TN4 253 aaKnown RBP9.02□□□□□ -0.97
SDC1-206ENST00000482879 CYB561D1Q8N8Q1 229 aa9.02□□□□□ -0.97
SDC1-206ENST00000482879 LINC00477Q96M19 166 aa9.02□□□□□ -0.97
SDC1-206ENST00000482879 AGPAT4-IT1Q9H0P7 198 aa9.02□□□□□ -0.97
SDC1-206ENST00000482879 PPP1R14DQ9NXH3 145 aa9.02□□□□□ -0.97
SDC1-206ENST00000482879 TRAV34A0A0B4J273 112 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms