RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 H2AFB2P0C5Z0 115 aa11.72□□□□□ -0.53
VIM-204ENST00000478746 VAMP1P23763 118 aa11.72□□□□□ -0.53
VIM-204ENST00000478746 UBE2MP61081 183 aaKnown RBP11.72□□□□□ -0.53
VIM-204ENST00000478746 RAP2BP61225 183 aa11.72□□□□□ -0.53
VIM-204ENST00000478746 RPP30P78346 268 aaKnown RBP11.72□□□□□ -0.53
VIM-204ENST00000478746 KIR3DS1Q14943 382 aa11.72□□□□□ -0.53
VIM-204ENST00000478746 CIB3Q96Q77 187 aaPredicted RBP11.72□□□□□ -0.53
VIM-204ENST00000478746 SHANK2-AS3Q9BTD1 123 aa11.72□□□□□ -0.53
VIM-204ENST00000478746 PRSS46E5RG02 174 aa11.71□□□□□ -0.53
VIM-204ENST00000478746 NXPH4O95158 308 aa11.71□□□□□ -0.53
VIM-204ENST00000478746 PTTG1O95997 202 aa11.71□□□□□ -0.53
VIM-204ENST00000478746 ANXA7P20073 488 aaKnown RBP11.71□□□□□ -0.53
VIM-204ENST00000478746 AKR1C1Q04828 323 aa11.71□□□□□ -0.53
VIM-204ENST00000478746 HIGD1AQ9Y241 93 aa11.71□□□□□ -0.53
VIM-204ENST00000478746 A0A087X0K7 114 aa11.7□□□□□ -0.54
VIM-204ENST00000478746 WRBO00258 174 aa11.7□□□□□ -0.54
VIM-204ENST00000478746 HYPMO75409 117 aa11.7□□□□□ -0.54
VIM-204ENST00000478746 SLC25A6P12236 298 aa11.7□□□□□ -0.54
VIM-204ENST00000478746 PPP1R1AQ13522 171 aa11.7□□□□□ -0.54
VIM-204ENST00000478746 C4orf46Q504U0 113 aa11.7□□□□□ -0.54
VIM-204ENST00000478746 Q6ZTI0 123 aa11.7□□□□□ -0.54
VIM-204ENST00000478746 TRGV2A0A075B6R0 118 aa11.69□□□□□ -0.54
VIM-204ENST00000478746 SYNGR2O43760 224 aa11.69□□□□□ -0.54
VIM-204ENST00000478746 SFT2D2O95562 160 aa11.69□□□□□ -0.54
VIM-204ENST00000478746 IL5P05113 134 aa11.69□□□□□ -0.54
VIM-204ENST00000478746 OR4E1P0C645 316 aa11.69□□□□□ -0.54
VIM-204ENST00000478746 HAMPP81172 84 aa11.69□□□□□ -0.54
VIM-204ENST00000478746 DAZ2Q13117 558 aaKnown RBP11.69□□□□□ -0.54
VIM-204ENST00000478746 RGS21Q2M5E4 152 aa11.69□□□□□ -0.54
VIM-204ENST00000478746 GFI1BQ5VTD9 330 aa11.69□□□□□ -0.54
VIM-204ENST00000478746 PARD6GQ9BYG4 376 aaPredicted RBP11.69□□□□□ -0.54
VIM-204ENST00000478746 TRAV9-2A0A087WT02 112 aa11.68□□□□□ -0.54
VIM-204ENST00000478746 INMT-MINDY4F8WBC2 141 aa11.68□□□□□ -0.54
VIM-204ENST00000478746 OR5G3P0C626 314 aa11.68□□□□□ -0.54
VIM-204ENST00000478746 SPANXN5Q5MJ07 72 aa11.68□□□□□ -0.54
VIM-204ENST00000478746 CYP2G1PQ6ZSU1 146 aa11.68□□□□□ -0.54
VIM-204ENST00000478746 C9orf170A2RU37 121 aa11.67□□□□□ -0.54
VIM-204ENST00000478746 ACOT7LQ6ZUV0 252 aa11.67□□□□□ -0.54
VIM-204ENST00000478746 S100A7AQ86SG5 101 aa11.67□□□□□ -0.54
VIM-204ENST00000478746 LRTM2Q8N967 370 aa11.67□□□□□ -0.54
VIM-204ENST00000478746 STRAPQ9Y3F4 350 aaKnown RBP11.67□□□□□ -0.54
VIM-204ENST00000478746 ICOSQ9Y6W8 199 aa11.67□□□□□ -0.54
VIM-204ENST00000478746 SMCO3A2RU48 225 aa11.66□□□□□ -0.54
VIM-204ENST00000478746 J3KRW8 73 aa11.66□□□□□ -0.54
VIM-204ENST00000478746 PAX4O43316 350 aa11.66□□□□□ -0.54
VIM-204ENST00000478746 PLP1P60201 277 aa11.66□□□□□ -0.54
VIM-204ENST00000478746 MARVELD1Q9BSK0 173 aa11.66□□□□□ -0.54
VIM-204ENST00000478746 TRAV12-3A0A0B4J271 114 aa11.65□□□□□ -0.54
VIM-204ENST00000478746 PMS2P5A8MQ11 134 aa11.65□□□□□ -0.54
VIM-204ENST00000478746 H3BP45 60 aa11.65□□□□□ -0.54
VIM-204ENST00000478746 PRAF2O60831 178 aa11.65□□□□□ -0.54
VIM-204ENST00000478746 LINC00869P0C866 280 aa11.65□□□□□ -0.54
VIM-204ENST00000478746 SEC22CQ9BRL7 303 aa11.65□□□□□ -0.54
VIM-204ENST00000478746 PYGO2Q9BRQ0 406 aa11.65□□□□□ -0.54
VIM-204ENST00000478746 TMEM70Q9BUB7 260 aa11.65□□□□□ -0.54
VIM-204ENST00000478746 GPN1Q9HCN4 374 aaPredicted RBP11.65□□□□□ -0.54
VIM-204ENST00000478746 ZNF331Q9NQX6 463 aaPredicted RBP11.65□□□□□ -0.54
VIM-204ENST00000478746 ZNF324O75467 553 aaPredicted RBP11.64□□□□□ -0.55
VIM-204ENST00000478746 CXCL2P19875 107 aa11.64□□□□□ -0.55
VIM-204ENST00000478746 SELENOTP62341 195 aa11.64□□□□□ -0.55
VIM-204ENST00000478746 LYPD5Q6UWN5 251 aa11.64□□□□□ -0.55
VIM-204ENST00000478746 LCN15Q6UWW0 184 aa11.64□□□□□ -0.55
VIM-204ENST00000478746 ZNF431Q8TF32 576 aaPredicted RBP11.64□□□□□ -0.55
VIM-204ENST00000478746 SLC50A1Q9BRV3 221 aa11.64□□□□□ -0.55
VIM-204ENST00000478746 GSN-AS1Q9NRJ2 163 aa11.64□□□□□ -0.55
VIM-204ENST00000478746 MSRB1Q9NZV6 116 aa11.64□□□□□ -0.55
VIM-204ENST00000478746 RNF24Q9Y225 148 aa11.64□□□□□ -0.55
VIM-204ENST00000478746 FUT9Q9Y231 359 aa11.64□□□□□ -0.55
VIM-204ENST00000478746 LY96Q9Y6Y9 160 aa11.64□□□□□ -0.55
VIM-204ENST00000478746 UBR4Q5T4S7 5183 aa11.63□□□□□ -0.55
VIM-204ENST00000478746 TRGV1A0A0A0MS02 117 aa11.63□□□□□ -0.55
VIM-204ENST00000478746 KRTAP29-1A8MX34 341 aaPredicted RBP11.63□□□□□ -0.55
VIM-204ENST00000478746 PRAC2D3DTV9 90 aa11.63□□□□□ -0.55
VIM-204ENST00000478746 MRPS12O15235 138 aaKnown RBP11.63□□□□□ -0.55
VIM-204ENST00000478746 HOXB5P09067 269 aa11.63□□□□□ -0.55
VIM-204ENST00000478746 SNRPCP09234 159 aaKnown RBP11.63□□□□□ -0.55
VIM-204ENST00000478746 MITD1Q8WV92 249 aa11.63□□□□□ -0.55
VIM-204ENST00000478746 ARL6Q9H0F7 186 aa11.63□□□□□ -0.55
VIM-204ENST00000478746 IGLV5-52A0A0A0MRZ9 124 aa11.62□□□□□ -0.55
VIM-204ENST00000478746 NPIPB6E9PJ23 425 aa11.62□□□□□ -0.55
VIM-204ENST00000478746 LEPP41159 167 aa11.62□□□□□ -0.55
VIM-204ENST00000478746 SERTAD4-AS1Q5TG53 156 aa11.62□□□□□ -0.55
VIM-204ENST00000478746 PATE2Q6UY27 113 aa11.62□□□□□ -0.55
VIM-204ENST00000478746 C12orf45Q8N5I9 185 aaPredicted RBP11.62□□□□□ -0.55
VIM-204ENST00000478746 K7EP13 123 aa11.61□□□□□ -0.55
VIM-204ENST00000478746 CT45A10P0DMU9 189 aa11.61□□□□□ -0.55
VIM-204ENST00000478746 MRPL23Q16540 153 aaKnown RBP11.61□□□□□ -0.55
VIM-204ENST00000478746 ZNF680Q8NEM1 530 aa11.61□□□□□ -0.55
VIM-204ENST00000478746 LINC00467Q9BRT7 94 aa11.61□□□□□ -0.55
VIM-204ENST00000478746 ARV1Q9H2C2 271 aa11.61□□□□□ -0.55
VIM-204ENST00000478746 PRO0255Q9UI72 69 aa11.61□□□□□ -0.55
VIM-204ENST00000478746 EVI2AP22794 236 aa11.6□□□□□ -0.55
VIM-204ENST00000478746 C11orf72Q8NBR9 251 aa11.6□□□□□ -0.55
VIM-204ENST00000478746 ODF3Q96PU9 254 aa11.6□□□□□ -0.55
VIM-204ENST00000478746 PSENENQ9NZ42 101 aa11.6□□□□□ -0.55
VIM-204ENST00000478746 IGHV3-53P01767 116 aa11.59□□□□□ -0.55
VIM-204ENST00000478746 PLA2G1BP04054 148 aaKnown RBP11.59□□□□□ -0.55
VIM-204ENST00000478746 POLR2GP62487 172 aaKnown RBP eCLIP11.59□□□□□ -0.55
VIM-204ENST00000478746 ID3Q02535 119 aa11.59□□□□□ -0.55
VIM-204ENST00000478746 SLAQ13239 276 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms