RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 Q86TA4 180 aa10.91□□□□□ -0.66
COL6A3-209ENST00000472056 LCN12Q6JVE5 192 aa10.91□□□□□ -0.66
COL6A3-209ENST00000472056 ZNF329Q86UD4 541 aa10.91□□□□□ -0.66
COL6A3-209ENST00000472056 AZU1P20160 251 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 BVES-AS1Q5T3Y7 98 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 C1orf122Q6ZSJ8 110 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 TMEM14BQ9NUH8 114 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 J3KT08 172 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 STPG4Q8N801 248 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 I3L3M4 83 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 NABP1Q96AH0 204 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 C20orf78Q9BR46 151 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 PYGO2Q9BRQ0 406 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 TMEM14CQ9P0S9 112 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 SRRM4A7MD48 611 aaKnown RBP10.9□□□□□ -0.66
COL6A3-209ENST00000472056 FAM104BQ5XKR9 115 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 SPATA25Q9BR10 227 aa10.9□□□□□ -0.66
COL6A3-209ENST00000472056 SPINK2P20155 84 aa10.9□□□□□ -0.67
COL6A3-209ENST00000472056 GATA2P23769 480 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-209ENST00000472056 GFI1Q99684 422 aa10.89□□□□□ -0.67
COL6A3-209ENST00000472056 IGHV1-2P23083 117 aa10.89□□□□□ -0.67
COL6A3-209ENST00000472056 ZCCHC24Q8N2G6 241 aaKnown RBP10.89□□□□□ -0.67
COL6A3-209ENST00000472056 CACNA1AO00555 2505 aa10.89□□□□□ -0.67
COL6A3-209ENST00000472056 HLA-DRB4P13762 266 aa10.89□□□□□ -0.67
COL6A3-209ENST00000472056 LY6EQ16553 131 aa10.89□□□□□ -0.67
COL6A3-209ENST00000472056 HLA-DRB4X5D2U9 266 aa10.89□□□□□ -0.67
COL6A3-209ENST00000472056 C3orf36Q3SXR2 165 aa10.89□□□□□ -0.67
COL6A3-209ENST00000472056 ZNF876PQ49A33 203 aa10.89□□□□□ -0.67
COL6A3-209ENST00000472056 TSSC4Q9Y5U2 329 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-209ENST00000472056 CELA2AP08217 269 aa10.89□□□□□ -0.67
COL6A3-209ENST00000472056 QRFPP83859 136 aa10.89□□□□□ -0.67
COL6A3-209ENST00000472056 NRTNQ99748 197 aa10.88□□□□□ -0.67
COL6A3-209ENST00000472056 PRSS47A8MTI9 375 aa10.88□□□□□ -0.67
COL6A3-209ENST00000472056 STPG1Q5TH74 334 aa10.88□□□□□ -0.67
COL6A3-209ENST00000472056 PFN1P07737 140 aaKnown RBP10.88□□□□□ -0.67
COL6A3-209ENST00000472056 EXOC3-AS1Q8N2X6 119 aa10.88□□□□□ -0.67
COL6A3-209ENST00000472056 FAM216BQ8N7L0 139 aa10.88□□□□□ -0.67
COL6A3-209ENST00000472056 COA6Q5JTJ3 125 aaKnown RBP10.87□□□□□ -0.67
COL6A3-209ENST00000472056 KIR2DL5BA0A0G2JN68 375 aa10.87□□□□□ -0.67
COL6A3-209ENST00000472056 KIR2DL5BA0A0G2JPC4 375 aa10.87□□□□□ -0.67
COL6A3-209ENST00000472056 FGF6P10767 208 aa10.87□□□□□ -0.67
COL6A3-209ENST00000472056 KIR2DL5AQ8N109 375 aa10.87□□□□□ -0.67
COL6A3-209ENST00000472056 SHANK2-AS3Q9BTD1 123 aa10.87□□□□□ -0.67
COL6A3-209ENST00000472056 LSM4Q9Y4Z0 139 aaKnown RBP10.87□□□□□ -0.67
COL6A3-209ENST00000472056 COLCA1Q6ZS62 124 aa10.87□□□□□ -0.67
COL6A3-209ENST00000472056 FOXG1P55316 489 aaPredicted RBP10.87□□□□□ -0.67
COL6A3-209ENST00000472056 C5orf64Q2M2E5 130 aa10.87□□□□□ -0.67
COL6A3-209ENST00000472056 IGHV2-70DA0A0C4DH43 119 aa10.87□□□□□ -0.67
COL6A3-209ENST00000472056 LYZL4Q96KX0 146 aa10.87□□□□□ -0.67
COL6A3-209ENST00000472056 ADCYAP1P18509 176 aa10.87□□□□□ -0.67
COL6A3-209ENST00000472056 CDCP2Q5VXM1 449 aa10.87□□□□□ -0.67
COL6A3-209ENST00000472056 CEACAM8P31997 349 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-209ENST00000472056 hADV29S1A0JD25 119 aa10.86□□□□□ -0.67
COL6A3-209ENST00000472056 IGHV3-66A0A0C4DH42 116 aa10.86□□□□□ -0.67
COL6A3-209ENST00000472056 EREGO14944 169 aa10.86□□□□□ -0.67
COL6A3-209ENST00000472056 IGKV1-5P01602 117 aa10.86□□□□□ -0.67
COL6A3-209ENST00000472056 CCL3L1P16619 93 aa10.86□□□□□ -0.67
COL6A3-209ENST00000472056 IL15RAQ13261 267 aa10.86□□□□□ -0.67
COL6A3-209ENST00000472056 C15orf62A8K5M9 175 aa10.86□□□□□ -0.67
COL6A3-209ENST00000472056 H0YJW9 148 aa10.86□□□□□ -0.67
COL6A3-209ENST00000472056 HERVK_113P63121 156 aa10.86□□□□□ -0.67
COL6A3-209ENST00000472056 AMN1Q8IY45 258 aa10.86□□□□□ -0.67
COL6A3-209ENST00000472056 ZNF625Q96I27 306 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-209ENST00000472056 SPXQ9BT56 116 aa10.86□□□□□ -0.67
COL6A3-209ENST00000472056 DAZ1Q9NQZ3 744 aaKnown RBP10.86□□□□□ -0.67
COL6A3-209ENST00000472056 RHOHQ15669 191 aa10.86□□□□□ -0.67
COL6A3-209ENST00000472056 A0A0U1RRA0 63 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 CFHR1Q03591 330 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 CD33P20138 364 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 LTBP1Q14766 1721 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 IGHV3-49A0A0A0MS15 119 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 IGKV1D-43A0A0B4J1Z2 117 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 TIAF1O95411 115 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 ETDBQ3ZM63 59 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 C5orf47Q569G3 176 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 SIGLEC8Q9NYZ4 499 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 IGHV3-35A0A0C4DH35 117 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 PSCAO43653 123 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 IGHV1-8P0DP01 117 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 MST1P26927 711 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 IGFBPL1Q8WX77 278 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 HTN3P15516 51 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 KLF5Q13887 457 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-209ENST00000472056 IGKV2-40A0A087WW87 121 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-209ENST00000472056 PRR19A6NJB7 356 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 NPYP01303 97 aa10.85□□□□□ -0.67
COL6A3-209ENST00000472056 IGKV2D-40P01614 121 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-209ENST00000472056 LYPD3O95274 346 aa10.84□□□□□ -0.67
COL6A3-209ENST00000472056 SCRT1Q9BWW7 348 aa10.84□□□□□ -0.67
COL6A3-209ENST00000472056 LENEPQ9Y5L5 61 aa10.84□□□□□ -0.67
COL6A3-209ENST00000472056 IGHV3OR16-13A0A075B7E8 117 aa10.84□□□□□ -0.67
COL6A3-209ENST00000472056 IGHV3-74A0A0B4J1X5 117 aa10.84□□□□□ -0.67
COL6A3-209ENST00000472056 C2CD3Q4AC94 2353 aa10.84□□□□□ -0.67
COL6A3-209ENST00000472056 C11orf52Q96A22 123 aa10.84□□□□□ -0.67
COL6A3-209ENST00000472056 C7orf69Q9H7B7 122 aa10.84□□□□□ -0.67
COL6A3-209ENST00000472056 VSIRQ9H7M9 311 aa10.84□□□□□ -0.67
COL6A3-209ENST00000472056 ZNF493Q6ZR52 646 aa10.84□□□□□ -0.67
COL6A3-209ENST00000472056 ATP6V0E2Q8NHE4 81 aa10.84□□□□□ -0.67
COL6A3-209ENST00000472056 GATA3P23771 443 aa10.84□□□□□ -0.67
COL6A3-209ENST00000472056 SIGLEC9Q9Y336 463 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms