RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 TMEM106BQ9NUM4 274 aa1.85□□□□□ -2.11
HERC4-208ENST00000463478 COPZ2Q9P299 210 aa1.85□□□□□ -2.11
HERC4-208ENST00000463478 HSPB8Q9UJY1 196 aa1.85□□□□□ -2.11
HERC4-208ENST00000463478 HIGD1AQ9Y241 93 aa1.85□□□□□ -2.11
HERC4-208ENST00000463478 NSD1Q96L73 2696 aaPredicted RBP1.85□□□□□ -2.11
HERC4-208ENST00000463478 ITPR1Q14643 2758 aa1.85□□□□□ -2.11
HERC4-208ENST00000463478 HMCN1Q96RW7 5635 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 ZNF106Q9H2Y7 1883 aaKnown RBP1.84□□□□□ -2.11
HERC4-208ENST00000463478 BRCA2P51587 3418 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 LOC107984640A0A0U1RRK4 108 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 OR2H2O95918 312 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 MPC1LP0DKB6 136 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 SDC4P31431 198 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 KRTAP5-7Q6L8G8 165 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 C4orf22Q6V702 233 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 Q8IYB0 196 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 LINC00311Q8N616 119 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 OR51A4Q8NGJ6 313 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 OR5H6Q8NGV6 325 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 ZNF431Q8TF32 576 aaPredicted RBP1.84□□□□□ -2.11
HERC4-208ENST00000463478 SFT2D1Q8WV19 159 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 HYLS1Q96M11 299 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 TPT1P8Q9HAU6 139 aa1.84□□□□□ -2.11
HERC4-208ENST00000463478 UBR2Q8IWV8 1755 aa1.84□□□□□ -2.12
HERC4-208ENST00000463478 TRPM6Q9BX84 2022 aa1.84□□□□□ -2.12
HERC4-208ENST00000463478 ASPMQ8IZT6 3477 aa1.84□□□□□ -2.12
HERC4-208ENST00000463478 MUC19Q7Z5P9 8384 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 TNS3Q68CZ2 1445 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 ACACBO00763 2458 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 USP34Q70CQ2 3546 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 COL4A2P08572 1712 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 PXDNLA1KZ92 1463 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 IQSEC2Q5JU85 1478 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 ADGRB3O60242 1522 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 GPX1P07203 203 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 SAA1P0DJI8 122 aaPredicted RBP1.83□□□□□ -2.12
HERC4-208ENST00000463478 TPT1P13693 172 aaKnown RBP1.83□□□□□ -2.12
HERC4-208ENST00000463478 ZNF93P35789 620 aaPredicted RBP1.83□□□□□ -2.12
HERC4-208ENST00000463478 SSR2P43308 183 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 CDK6Q00534 326 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 MORN4Q8NDC4 146 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 CCL4L1Q8NHW4 92 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 TP53RKQ96S44 253 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 RETNLBQ9BQ08 111 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 CBLN4Q9NTU7 201 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 MALRD1Q5VYJ5 2156 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 CFAP54Q96N23 3096 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 NHSL1Q5SYE7 1610 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 PIK3C2AO00443 1686 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 PCNX1Q96RV3 2341 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 WDR90Q96KV7 1748 aa1.83□□□□□ -2.12
HERC4-208ENST00000463478 ZFHX3Q15911 3703 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 ECM29Q5VYK3 1845 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 MYO9BQ13459 2157 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 DENND4CQ5VZ89 1909 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 MYH2Q9UKX2 1941 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.82□□□□□ -2.12
HERC4-208ENST00000463478 TRAV1-1A0A0B4J248 108 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 OR2T8A6NH00 312 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 UQCRQO14949 82 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 MT-ND6P03923 174 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 COX4I1P13073 169 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 KRTAP12-4P60329 112 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 PSPHP78330 225 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 QRFPP83859 136 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 HES1Q14469 280 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 ASB16-AS1Q495Z4 193 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 RNASE10Q5GAN6 216 aaKnown RBP1.82□□□□□ -2.12
HERC4-208ENST00000463478 HAGHLQ6PII5 290 aaPredicted RBP1.82□□□□□ -2.12
HERC4-208ENST00000463478 SPACA4Q8TDM5 124 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 MUCL1Q96DR8 90 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 TSC22D3Q99576 134 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 ADAMTS7Q9UKP4 1686 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 HIVEP3Q5T1R4 2406 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 AKAP13Q12802 2813 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 CEP152O94986 1710 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 SBF1O95248 1867 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 CECR2Q9BXF3 1484 aa1.82□□□□□ -2.12
HERC4-208ENST00000463478 MYH11P35749 1972 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 BAZ1AQ9NRL2 1556 aaPredicted RBP1.81□□□□□ -2.12
HERC4-208ENST00000463478 C5orf42Q9H799 3197 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 TRAV14DV4A0A0A6YYC5 116 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 TCRBV4S1A1TA0A5B7 111 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 hDV103S1A0JD37 113 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 M0R233 179 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 PAEPP09466 180 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 FABP4P15090 132 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 BRS3P32247 399 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 MAXP61244 160 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 CDK5R1Q15078 307 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 LRRC18Q8N456 261 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 MMGT1Q8N4V1 131 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 OR5D14Q8NGL3 314 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 POP5Q969H6 163 aaKnown RBP1.81□□□□□ -2.12
HERC4-208ENST00000463478 MED9Q9NWA0 146 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 TPRKBQ9Y3C4 175 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 PLXND1Q9Y4D7 1925 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 OVOS2A0A0J9YW53 1432 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 OVOS2Q6IE36 1432 aa1.81□□□□□ -2.12
HERC4-208ENST00000463478 FBN1P35555 2871 aaKnown RBP1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms