RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 Q9H3A6 140 aa12.78□□□□□ -0.36
LIME1-202ENST00000444951 AAMDCQ9H7C9 122 aa12.78□□□□□ -0.36
LIME1-202ENST00000444951 SORL1Q92673 2214 aa12.78□□□□□ -0.36
LIME1-202ENST00000444951 KNCNA6PVL3 124 aa12.77□□□□□ -0.37
LIME1-202ENST00000444951 TEX46H3BTG2 121 aa12.77□□□□□ -0.37
LIME1-202ENST00000444951 ZNF253O75346 499 aa12.77□□□□□ -0.37
LIME1-202ENST00000444951 HBE1P02100 147 aa12.77□□□□□ -0.37
LIME1-202ENST00000444951 CMC4P56277 68 aaPredicted RBP12.77□□□□□ -0.37
LIME1-202ENST00000444951 Q8N1Y9 231 aa12.77□□□□□ -0.37
LIME1-202ENST00000444951 C19orf73Q9NVV2 129 aa12.77□□□□□ -0.37
LIME1-202ENST00000444951 RPH3ALQ9UNE2 315 aa12.77□□□□□ -0.37
LIME1-202ENST00000444951 U3KQK5 164 aa12.77□□□□□ -0.37
LIME1-202ENST00000444951 PGPA6NDG6 321 aa12.76□□□□□ -0.37
LIME1-202ENST00000444951 F6UB75 175 aa12.76□□□□□ -0.37
LIME1-202ENST00000444951 M0R3E3 92 aa12.76□□□□□ -0.37
LIME1-202ENST00000444951 RPUSD4Q96CM3 377 aaKnown RBP12.76□□□□□ -0.37
LIME1-202ENST00000444951 GNG13Q9P2W3 67 aa12.76□□□□□ -0.37
LIME1-202ENST00000444951 STARD9Q9P2P6 4700 aa12.76□□□□□ -0.37
LIME1-202ENST00000444951 NHLRC4P0CG21 123 aaPredicted RBP12.75□□□□□ -0.37
LIME1-202ENST00000444951 ZNF705DP0CH99 300 aaPredicted RBP12.75□□□□□ -0.37
LIME1-202ENST00000444951 ZNF705BP0CI00 300 aaPredicted RBP12.75□□□□□ -0.37
LIME1-202ENST00000444951 IFITM2Q01629 132 aa12.75□□□□□ -0.37
LIME1-202ENST00000444951 ACTL10Q5JWF8 245 aa12.75□□□□□ -0.37
LIME1-202ENST00000444951 CST9LP1Q5W188 147 aa12.75□□□□□ -0.37
LIME1-202ENST00000444951 SUN5Q8TC36 379 aa12.75□□□□□ -0.37
LIME1-202ENST00000444951 TUBA4BQ9H853 241 aa12.75□□□□□ -0.37
LIME1-202ENST00000444951 SRD5A3Q9H8P0 318 aa12.75□□□□□ -0.37
LIME1-202ENST00000444951 OTORQ9NRC9 128 aa12.75□□□□□ -0.37
LIME1-202ENST00000444951 YTHDF2Q9Y5A9 579 aaKnown RBP12.75□□□□□ -0.37
LIME1-202ENST00000444951 TRAV1-1A0A0B4J248 108 aa12.74□□□□□ -0.37
LIME1-202ENST00000444951 PRAC2D3DTV9 90 aa12.74□□□□□ -0.37
LIME1-202ENST00000444951 PAGE4O60829 102 aa12.74□□□□□ -0.37
LIME1-202ENST00000444951 IGKV3-20P01619 116 aa12.74□□□□□ -0.37
LIME1-202ENST00000444951 GDF5OSQ5U4N7 250 aa12.74□□□□□ -0.37
LIME1-202ENST00000444951 CITED4Q96RK1 184 aa12.74□□□□□ -0.37
LIME1-202ENST00000444951 LYSTQ99698 3801 aa12.74□□□□□ -0.37
LIME1-202ENST00000444951 FAM74A7A6NL05 159 aa12.73□□□□□ -0.37
LIME1-202ENST00000444951 SLC25A5P05141 298 aaKnown RBP12.73□□□□□ -0.37
LIME1-202ENST00000444951 SUMO1P63165 101 aaKnown RBP12.73□□□□□ -0.37
LIME1-202ENST00000444951 EBLN2Q6P2I7 272 aa12.73□□□□□ -0.37
LIME1-202ENST00000444951 LYPD1Q8N2G4 141 aa12.73□□□□□ -0.37
LIME1-202ENST00000444951 CMTM2Q8TAZ6 248 aa12.73□□□□□ -0.37
LIME1-202ENST00000444951 CLEC5AQ9NY25 188 aa12.73□□□□□ -0.37
LIME1-202ENST00000444951 PRELID1Q9Y255 219 aa12.73□□□□□ -0.37
LIME1-202ENST00000444951 GGTLC3B5MD39 225 aa12.72□□□□□ -0.37
LIME1-202ENST00000444951 IGHV4-30-4P0DP06 118 aa12.72□□□□□ -0.37
LIME1-202ENST00000444951 RPL35AP18077 110 aaKnown RBP12.72□□□□□ -0.37
LIME1-202ENST00000444951 CSN1S1P47710 185 aa12.72□□□□□ -0.37
LIME1-202ENST00000444951 GNG5P63218 68 aa12.72□□□□□ -0.37
LIME1-202ENST00000444951 HIST1H1AQ02539 215 aaPredicted RBP12.72□□□□□ -0.37
LIME1-202ENST00000444951 HAGHQ16775 308 aa12.72□□□□□ -0.37
LIME1-202ENST00000444951 STHQ8IWL8 128 aa12.72□□□□□ -0.37
LIME1-202ENST00000444951 OR4B1Q8NGF8 309 aa12.72□□□□□ -0.37
LIME1-202ENST00000444951 FAM110AQ9BQ89 295 aa12.72□□□□□ -0.37
LIME1-202ENST00000444951 IGKV2-40A0A087WW87 121 aaPredicted RBP12.71□□□□□ -0.37
LIME1-202ENST00000444951 A0A1W2PRE2 83 aa12.71□□□□□ -0.37
LIME1-202ENST00000444951 IGKV2D-40P01614 121 aaPredicted RBP12.71□□□□□ -0.37
LIME1-202ENST00000444951 ATP5G3P48201 142 aa12.71□□□□□ -0.37
LIME1-202ENST00000444951 PPT1P50897 306 aa12.71□□□□□ -0.37
LIME1-202ENST00000444951 RAB14P61106 215 aa12.71□□□□□ -0.37
LIME1-202ENST00000444951 FOXI2Q6ZQN5 318 aa12.71□□□□□ -0.37
LIME1-202ENST00000444951 ZNF767PQ75MW2 155 aa12.71□□□□□ -0.37
LIME1-202ENST00000444951 SAV1Q9H4B6 383 aaPredicted RBP12.71□□□□□ -0.37
LIME1-202ENST00000444951 A0A0J9YX75 114 aa12.7□□□□□ -0.38
LIME1-202ENST00000444951 IFNA1P01562 189 aa12.7□□□□□ -0.38
LIME1-202ENST00000444951 NMBP08949 121 aa12.7□□□□□ -0.38
LIME1-202ENST00000444951 OR8A1Q8NGG7 326 aa12.7□□□□□ -0.38
LIME1-202ENST00000444951 OR10J6PQ8NGY7 276 aa12.7□□□□□ -0.38
LIME1-202ENST00000444951 MRPL53Q96EL3 112 aaKnown RBP12.7□□□□□ -0.38
LIME1-202ENST00000444951 MANBALQ9NQG1 85 aa12.7□□□□□ -0.38
LIME1-202ENST00000444951 ERCC8Q13216 396 aa12.69□□□□□ -0.38
LIME1-202ENST00000444951 GOLT1AQ6ZVE7 132 aa12.69□□□□□ -0.38
LIME1-202ENST00000444951 C5orf17Q8NAS9 161 aa12.69□□□□□ -0.38
LIME1-202ENST00000444951 RXFP4Q8TDU9 374 aa12.69□□□□□ -0.38
LIME1-202ENST00000444951 DNAH1Q9P2D7 4330 aa12.69□□□□□ -0.38
LIME1-202ENST00000444951 CSMD3Q7Z407 3707 aa12.68□□□□□ -0.38
LIME1-202ENST00000444951 RBMY1BA6NDE4 496 aaKnown RBP12.68□□□□□ -0.38
LIME1-202ENST00000444951 RBMY1EA6NEQ0 496 aaKnown RBP12.68□□□□□ -0.38
LIME1-202ENST00000444951 DIRC3C9JPN6 131 aa12.68□□□□□ -0.38
LIME1-202ENST00000444951 C11orf94C9JXX5 98 aa12.68□□□□□ -0.38
LIME1-202ENST00000444951 H3BMM0 161 aa12.68□□□□□ -0.38
LIME1-202ENST00000444951 RBMY1DP0C7P1 496 aaKnown RBP12.68□□□□□ -0.38
LIME1-202ENST00000444951 HLA-DRB4P13762 266 aa12.68□□□□□ -0.38
LIME1-202ENST00000444951 CNN1P51911 297 aaKnown RBP12.68□□□□□ -0.38
LIME1-202ENST00000444951 SBSPONQ8IVN8 264 aa12.68□□□□□ -0.38
LIME1-202ENST00000444951 PPP1R14DQ9NXH3 145 aa12.68□□□□□ -0.38
LIME1-202ENST00000444951 EPDR1Q9UM22 224 aa12.68□□□□□ -0.38
LIME1-202ENST00000444951 HLA-DRB4X5D2U9 266 aa12.68□□□□□ -0.38
LIME1-202ENST00000444951 DUSP14O95147 198 aaKnown RBP12.67□□□□□ -0.38
LIME1-202ENST00000444951 FXYD7P58549 80 aa12.67□□□□□ -0.38
LIME1-202ENST00000444951 LYPD6BQ8NI32 183 aa12.67□□□□□ -0.38
LIME1-202ENST00000444951 SGK494Q96LW2 274 aa12.67□□□□□ -0.38
LIME1-202ENST00000444951 RARRES2Q99969 163 aa12.67□□□□□ -0.38
LIME1-202ENST00000444951 VGLL1Q99990 258 aa12.67□□□□□ -0.38
LIME1-202ENST00000444951 NKX6-2Q9C056 277 aaPredicted RBP12.67□□□□□ -0.38
LIME1-202ENST00000444951 TENM2Q9NT68 2774 aa12.67□□□□□ -0.38
LIME1-202ENST00000444951 LOC102724200A0A096LPH7 203 aaPredicted RBP12.66□□□□□ -0.38
LIME1-202ENST00000444951 TCRAP04437 139 aa12.66□□□□□ -0.38
LIME1-202ENST00000444951 FRMD6-AS1P0C7T7 363 aa12.66□□□□□ -0.38
LIME1-202ENST00000444951 BCL2P10415 239 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms