RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 TPPP3Q9BW30 176 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 IGHV3OR16-8A0A075B7F1 116 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 IGHV3-35A0A0C4DH35 117 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 OR5AL1P0C617 328 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 GPR183P32249 361 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 HNRNPA3P51991 378 aaKnown RBP12.43□□□□□ -0.42
SHQ1-202ENST00000444040 ECSCRQ19T08 205 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 CYB5R2Q6BCY4 276 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 ZFAND3Q9H8U3 227 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 LPAR2Q9HBW0 351 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 TMEM189A5PLL7 270 aa12.42□□□□□ -0.42
SHQ1-202ENST00000444040 G0S2P27469 103 aa12.42□□□□□ -0.42
SHQ1-202ENST00000444040 RELQ04864 619 aaPredicted RBP12.42□□□□□ -0.42
SHQ1-202ENST00000444040 IGFL4Q6B9Z1 124 aa12.42□□□□□ -0.42
SHQ1-202ENST00000444040 LYZL1Q6UWQ5 148 aa12.42□□□□□ -0.42
SHQ1-202ENST00000444040 FBLL1A6NHQ2 334 aaKnown RBP12.42□□□□□ -0.42
SHQ1-202ENST00000444040 HLA-DMBP28068 263 aa12.42□□□□□ -0.42
SHQ1-202ENST00000444040 PIP4P2Q8N4L2 257 aa12.42□□□□□ -0.42
SHQ1-202ENST00000444040 VGLL1Q99990 258 aa12.42□□□□□ -0.42
SHQ1-202ENST00000444040 TMSB15BA0A087X1C1 80 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 OR4C46A6NHA9 309 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 C19orf84I3L1E1 186 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 CSN3P07498 182 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 ZNF25P17030 456 aaPredicted RBP12.41□□□□□ -0.42
SHQ1-202ENST00000444040 TSPOP30536 169 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 RHOGP84095 191 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 LAMTOR2Q9Y2Q5 125 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 HIVEP3Q5T1R4 2406 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 WNK2Q9Y3S1 2297 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 CENPVL3A0A0U1RRI6 287 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 LINC01548A6NM66 108 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 CLEC3BP05452 202 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 ZNF575Q86XF7 245 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 Q8TAT8 98 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 MED13LQ71F56 2210 aa12.41□□□□□ -0.42
SHQ1-202ENST00000444040 SPTBN1Q01082 2364 aaKnown RBP12.4□□□□□ -0.42
SHQ1-202ENST00000444040 ZNF80P51504 273 aaPredicted RBP12.4□□□□□ -0.42
SHQ1-202ENST00000444040 ASH1LQ9NR48 2969 aaKnown RBP12.4□□□□□ -0.42
SHQ1-202ENST00000444040 TMEM213A2RRL7 107 aa12.4□□□□□ -0.42
SHQ1-202ENST00000444040 BUB3O43684 328 aa12.4□□□□□ -0.42
SHQ1-202ENST00000444040 COL5A1-AS1Q5SY13 56 aa12.4□□□□□ -0.42
SHQ1-202ENST00000444040 CCDC140Q96MF4 163 aa12.4□□□□□ -0.42
SHQ1-202ENST00000444040 MRPS16Q9Y3D3 137 aaKnown RBP12.4□□□□□ -0.42
SHQ1-202ENST00000444040 G3V318 75 aa12.39□□□□□ -0.43
SHQ1-202ENST00000444040 UQCRFS1P47985 274 aa12.39□□□□□ -0.43
SHQ1-202ENST00000444040 TMEM208Q9BTX3 173 aa12.39□□□□□ -0.43
SHQ1-202ENST00000444040 PRORYQ9H606 182 aa12.39□□□□□ -0.43
SHQ1-202ENST00000444040 CLPSL1A2RUU4 121 aa12.39□□□□□ -0.43
SHQ1-202ENST00000444040 NPFFO15130 113 aa12.39□□□□□ -0.43
SHQ1-202ENST00000444040 S100A7P31151 101 aa12.39□□□□□ -0.43
SHQ1-202ENST00000444040 STPG4Q8N801 248 aa12.39□□□□□ -0.43
SHQ1-202ENST00000444040 AP5S1Q9NUS5 200 aa12.39□□□□□ -0.43
SHQ1-202ENST00000444040 A0A087X0K7 114 aa12.38□□□□□ -0.43
SHQ1-202ENST00000444040 TFPI2P48307 235 aa12.38□□□□□ -0.43
SHQ1-202ENST00000444040 FAM104BQ5XKR9 115 aa12.38□□□□□ -0.43
SHQ1-202ENST00000444040 PSMG3-AS1Q96PY0 264 aa12.38□□□□□ -0.43
SHQ1-202ENST00000444040 U3KQK5 164 aa12.38□□□□□ -0.43
SHQ1-202ENST00000444040 SFTPCP11686 197 aa12.38□□□□□ -0.43
SHQ1-202ENST00000444040 PET117Q6UWS5 81 aa12.38□□□□□ -0.43
SHQ1-202ENST00000444040 MAP1LC3CQ9BXW4 147 aa12.38□□□□□ -0.43
SHQ1-202ENST00000444040 BMI1P35226 326 aa12.37□□□□□ -0.43
SHQ1-202ENST00000444040 RAB9AP51151 201 aa12.37□□□□□ -0.43
SHQ1-202ENST00000444040 AMN1Q8IY45 258 aa12.37□□□□□ -0.43
SHQ1-202ENST00000444040 C5orf56Q8N8D9 126 aa12.37□□□□□ -0.43
SHQ1-202ENST00000444040 HSPB8Q9UJY1 196 aa12.37□□□□□ -0.43
SHQ1-202ENST00000444040 DLEU1O43261 78 aa12.37□□□□□ -0.43
SHQ1-202ENST00000444040 IGLC6P0CF74 106 aa12.37□□□□□ -0.43
SHQ1-202ENST00000444040 CLEC19AQ6UXS0 136 aa12.37□□□□□ -0.43
SHQ1-202ENST00000444040 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.37□□□□□ -0.43
SHQ1-202ENST00000444040 SPTBN4Q9H254 2564 aa12.36□□□□□ -0.43
SHQ1-202ENST00000444040 PRAC2D3DTV9 90 aa12.36□□□□□ -0.43
SHQ1-202ENST00000444040 D6R8Y8 96 aa12.36□□□□□ -0.43
SHQ1-202ENST00000444040 GOSR1O95249 250 aa12.36□□□□□ -0.43
SHQ1-202ENST00000444040 PRSS3P2Q8NHM4 247 aa12.36□□□□□ -0.43
SHQ1-202ENST00000444040 ST20Q9HBF5 79 aa12.36□□□□□ -0.43
SHQ1-202ENST00000444040 RPS20P60866 119 aaKnown RBP12.36□□□□□ -0.43
SHQ1-202ENST00000444040 SRSF2Q01130 221 aaKnown RBP12.36□□□□□ -0.43
SHQ1-202ENST00000444040 GAGE1Q13065 139 aa12.36□□□□□ -0.43
SHQ1-202ENST00000444040 TMEM191AQ9H0A3 160 aa12.36□□□□□ -0.43
SHQ1-202ENST00000444040 MUC21A0A0G2JKD1 596 aa12.35□□□□□ -0.43
SHQ1-202ENST00000444040 MUC21A0A140T8X8 626 aa12.35□□□□□ -0.43
SHQ1-202ENST00000444040 hDV102S1A0JD36 115 aa12.35□□□□□ -0.43
SHQ1-202ENST00000444040 IGHV4-39P01824 125 aa12.35□□□□□ -0.43
SHQ1-202ENST00000444040 GNLYP22749 145 aa12.35□□□□□ -0.43
SHQ1-202ENST00000444040 IFI27P40305 119 aaPredicted RBP12.35□□□□□ -0.43
SHQ1-202ENST00000444040 FAM106AQ4KMX7 169 aa12.35□□□□□ -0.43
SHQ1-202ENST00000444040 MUC21Q5SSG8 566 aa12.35□□□□□ -0.43
SHQ1-202ENST00000444040 ZNF747Q9BV97 191 aa12.35□□□□□ -0.43
SHQ1-202ENST00000444040 A0A096LNJ9 63 aa12.35□□□□□ -0.43
SHQ1-202ENST00000444040 ERCC8Q13216 396 aa12.35□□□□□ -0.43
SHQ1-202ENST00000444040 MRPL51Q4U2R6 128 aaKnown RBP12.35□□□□□ -0.43
SHQ1-202ENST00000444040 FA2HQ7L5A8 372 aa12.35□□□□□ -0.43
SHQ1-202ENST00000444040 FER1L6-AS1Q8NA97 138 aa12.35□□□□□ -0.43
SHQ1-202ENST00000444040 MCRIP2Q9BUT9 160 aaKnown RBP12.35□□□□□ -0.43
SHQ1-202ENST00000444040 LINC01545Q5VT33 79 aa12.34□□□□□ -0.43
SHQ1-202ENST00000444040 EEF1AKMT3Q96AZ1 226 aa12.34□□□□□ -0.43
SHQ1-202ENST00000444040 SIGLEC8Q9NYZ4 499 aa12.34□□□□□ -0.43
SHQ1-202ENST00000444040 IGHV3-66A0A0C4DH42 116 aa12.34□□□□□ -0.43
SHQ1-202ENST00000444040 PAX8Q06710 450 aa12.34□□□□□ -0.43
SHQ1-202ENST00000444040 ZNF124Q15973 351 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms