RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 IQCF1Q8N6M8 205 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 OR11H6Q8NGC7 330 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 OR10W1Q8NGF6 305 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 OR4X1Q8NH49 305 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 MAP1LC3CQ9BXW4 147 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 MS4A6AQ9H2W1 248 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 TUBB1Q9H4B7 451 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 EHFQ9NZC4 300 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 U3KQE9 123 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 TSC2P49815 1807 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 MYH6P13533 1939 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 ANKRD36CQ5JPF3 1778 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 IGLV3-16A0A075B6K0 115 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 LOC107984640A0A0U1RRK4 108 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 GAGE10A6NGK3 116 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 M0R381 172 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 NDUFA1O15239 70 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 FABP7O15540 132 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 IGHV3-48P01763 117 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 SHBGP04278 402 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 G0S2P27469 103 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 MAPK11Q15759 364 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 Q8N2B8 174 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 LYRM2Q9NU23 88 aaPredicted RBP1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 TMEM131Q92545 1883 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 MYH7P12883 1935 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 WDR81Q562E7 1941 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 ALPK3Q96L96 1907 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 PARP14Q460N5 1801 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 hCG_2014768A0A024R1R8 64 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 TRBV5-5A0A0J9YX44 114 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 VGLL3A8MV65 326 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 RPS27P42677 84 aaKnown RBP1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 RPS10P46783 165 aaKnown RBP1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 RANP62826 216 aaKnown RBP1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 FHL2Q14192 279 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 IL13RA2Q14627 380 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 MIAQ16674 131 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 LCN15Q6UWW0 184 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNRF2Q8NHG8 242 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 PLPPR1Q8TBJ4 325 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 PLAC4Q8WY50 150 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF471Q9BX82 626 aaPredicted RBP1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 GSN-AS1Q9NRJ2 163 aa1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 RBFOX1Q9NWB1 397 aaKnown RBP1.96□□□□□ -2.1
CCDC88A-205ENST00000426576 COL7A1Q02388 2944 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 NF1P21359 2839 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 ECM29Q5VYK3 1845 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 IGKV1D-37A0A075B6S9 117 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 TRAV12-2A0A075B6T6 113 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 IGSF23A1L1A6 192 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 TRGC1P0CF51 173 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 TAS2R20P59543 309 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 HLA-DRB3P79483 266 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 LINC01559Q495D7 138 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 RAB6CQ53S08 254 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 C10orf128Q5T292 105 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 MCFD2Q8NI22 146 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 TMEM243Q9BU79 118 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 C20orf85Q9H1P6 137 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 BANF2Q9H503 90 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 KCNE5Q9UJ90 142 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 RAB6AP20340 208 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 COX6A2Q02221 97 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 SYCNQ0VAF6 134 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 PAPPA-AS1Q5QFB9 102 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 SOSTDC1Q6X4U4 206 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 TMEM123Q8N131 208 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 GPR32P1Q8NGA4 272 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 DCANP1Q8TF63 244 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 TMEM263Q8WUH6 116 aaKnown RBP1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 MAL2Q969L2 176 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 ZNF75AQ96N20 296 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 C2orf88Q9BSF0 95 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 KLK9Q9UKQ9 250 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 LAMA4Q16363 1823 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 DMXL2Q8TDJ6 3036 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 IGLV1-50A0A075B6I6 118 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 C15orf62A8K5M9 175 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 SDHDO14521 159 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 HPGDSO60760 199 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 MBPP02686 304 aaPredicted RBP1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 SLC25A5P05141 298 aaKnown RBP1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 CEBPGP53567 150 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 DAZ2Q13117 558 aaKnown RBP1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 MZT2BQ6NZ67 158 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 MZT2AQ6P582 158 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 SCXQ7RTU7 201 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 KRTAP1-3Q8IUG1 177 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 GATD1Q8NB37 220 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 INO80EQ8NBZ0 244 aaPredicted RBP1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 TEX37Q96LM6 180 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 OR2W1Q9Y3N9 320 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 PCSK5Q92824 1860 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 TCHHQ07283 1943 aa1.95□□□□□ -2.1
CCDC88A-205ENST00000426576 ARHGAP32A7KAX9 2087 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 IGKV1D-17A0A075B6S4 117 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 IGKV1-27A0A075B6S5 117 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 IGKV3D-20A0A0C4DH25 116 aa1.94□□□□□ -2.1
CCDC88A-205ENST00000426576 ANKRD20A5PA0PJZ0 165 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms