RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 TMEM126AQ9H061 195 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 OR51M1Q9H341 326 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 TMEM242Q9NWH2 141 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 PHLDA3Q9Y5J5 127 aa6.87□□□□□ -1.31
SYNE1-211ENST00000413186 EBLN2Q6P2I7 272 aa6.86□□□□□ -1.31
SYNE1-211ENST00000413186 SPSB3Q6PJ21 355 aa6.86□□□□□ -1.31
SYNE1-211ENST00000413186 SPATA25Q9BR10 227 aa6.86□□□□□ -1.31
SYNE1-211ENST00000413186 LIME1Q9H400 295 aa6.86□□□□□ -1.31
SYNE1-211ENST00000413186 WFDC1Q9HC57 220 aa6.86□□□□□ -1.31
SYNE1-211ENST00000413186 ZNRD1Q9P1U0 126 aa6.86□□□□□ -1.31
SYNE1-211ENST00000413186 A0A1B0GWJ7 208 aa6.86□□□□□ -1.31
SYNE1-211ENST00000413186 TCRBV4S1A1TA0A5B7 111 aa6.86□□□□□ -1.31
SYNE1-211ENST00000413186 IGFBP2P18065 325 aa6.86□□□□□ -1.31
SYNE1-211ENST00000413186 MDKP21741 143 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-211ENST00000413186 CFAP161Q6P656 301 aa6.86□□□□□ -1.31
SYNE1-211ENST00000413186 AGMATQ9BSE5 352 aa6.86□□□□□ -1.31
SYNE1-211ENST00000413186 TRAV3A0A0B4J244 114 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 K7ERS5 55 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 IGHV3-11P01762 117 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 CRPP02741 224 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 CDKN1BP46527 198 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 LMO4P61968 165 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 CDSNQ15517 529 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 WFDC3Q8IUB2 231 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 SDF2L1Q9HCN8 221 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 C5orf30Q96GV9 206 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 BBC3Q96PG8 261 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-211ENST00000413186 FAM223BA6NKX1 122 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 LINC00205P59089 165 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 SRSF2Q01130 221 aaKnown RBP6.85□□□□□ -1.31
SYNE1-211ENST00000413186 FAM223AQ8IWN6 122 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 TMEM14BQ9NUH8 114 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 TRBV7-1A0A0A6YYK4 115 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 IGHV3-35A0A0C4DH35 117 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 ICAM4Q14773 271 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 WFDC9Q8NEX5 89 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 C14orf144Q96I85 54 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 SLC25A2Q9BXI2 301 aa6.85□□□□□ -1.31
SYNE1-211ENST00000413186 MFAP2P55001 183 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 SNRPD3P62318 126 aaKnown RBP6.84□□□□□ -1.31
SYNE1-211ENST00000413186 IL15RAQ13261 267 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 ATXN8Q156A1 80 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 C15orf32Q32M92 178 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 IBA57Q5T440 356 aaKnown RBP6.84□□□□□ -1.31
SYNE1-211ENST00000413186 LINC00305Q7Z4B0 112 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 NCKAP5O14513 1909 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 CHD3Q12873 2000 aaKnown RBP6.84□□□□□ -1.31
SYNE1-211ENST00000413186 F6UB75 175 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 DAD1P61803 113 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 TMEM78Q5T7P6 136 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 IGHV3-23P01764 117 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 KIAA1644Q3SXP7 199 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 MPLKIPQ8TAP9 179 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 FAM110DQ8TAY7 271 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-211ENST00000413186 LINC00527Q9UJ94 153 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 S4R3C0 116 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 LRRK2Q5S007 2527 aa6.84□□□□□ -1.31
SYNE1-211ENST00000413186 CENPVL3A0A0U1RRI6 287 aa6.84□□□□□ -1.32
SYNE1-211ENST00000413186 BUB3O43684 328 aa6.84□□□□□ -1.32
SYNE1-211ENST00000413186 NDUFS6O75380 124 aaKnown RBP6.84□□□□□ -1.32
SYNE1-211ENST00000413186 FOLR2P14207 255 aa6.84□□□□□ -1.32
SYNE1-211ENST00000413186 RPS20P60866 119 aaKnown RBP6.84□□□□□ -1.32
SYNE1-211ENST00000413186 RNF125Q96EQ8 232 aa6.84□□□□□ -1.32
SYNE1-211ENST00000413186 LINC00574Q9H8X3 128 aa6.84□□□□□ -1.32
SYNE1-211ENST00000413186 KLF12Q9Y4X4 402 aa6.84□□□□□ -1.32
SYNE1-211ENST00000413186 A0A1W2PRE2 83 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 OVOL3O00110 214 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 PAX8Q06710 450 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 FAM53AQ6NSI3 398 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-211ENST00000413186 Q6ZRM9 215 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 VPREB3Q9UKI3 123 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 KIAA1549Q9HCM3 1950 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 TRAV2A0A0B4J234 112 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 A0A0G2JRQ6 117 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 PGPA6NDG6 321 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 B5MCH6 92 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 F8WEM9 126 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 ZFP36P26651 326 aaKnown RBP6.83□□□□□ -1.32
SYNE1-211ENST00000413186 GBGT1Q8N5D6 347 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 LY6G5BQ8NDX9 201 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 RNF114Q9Y508 228 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 IGLV1-47P01700 117 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 RNASE2P10153 161 aaKnown RBP6.83□□□□□ -1.32
SYNE1-211ENST00000413186 PAX1P15863 534 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 CKS2P33552 79 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 ZNF56Q15929 161 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 GAGE13Q4V321 117 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 TCF23Q7RTU1 214 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 DUX3Q96PT4 197 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 IMMP2LQ96T52 175 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 SIRPDQ9H106 197 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 NDUFA4L2Q9NRX3 87 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 TRAV12-2A0A075B6T6 113 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 EVI2AP22794 236 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 TFPI2P48307 235 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 MRPL23Q16540 153 aaKnown RBP6.83□□□□□ -1.32
SYNE1-211ENST00000413186 RRN3P1Q2M238 152 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 DEFB112Q30KQ8 113 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 FBLN7Q53RD9 439 aa6.83□□□□□ -1.32
SYNE1-211ENST00000413186 UTF1Q5T230 341 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms