RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 CTDSP1Q9GZU7 261 aa10.68□□□□□ -0.7
GPNMB-203ENST00000409458 TMEM242Q9NWH2 141 aa10.68□□□□□ -0.7
GPNMB-203ENST00000409458 COLCA2A8K830 154 aa10.67□□□□□ -0.7
GPNMB-203ENST00000409458 GCGP01275 180 aa10.67□□□□□ -0.7
GPNMB-203ENST00000409458 LTAP01374 205 aa10.67□□□□□ -0.7
GPNMB-203ENST00000409458 S100A9P06702 114 aaKnown RBP10.67□□□□□ -0.7
GPNMB-203ENST00000409458 MGST1P10620 155 aaKnown RBP10.67□□□□□ -0.7
GPNMB-203ENST00000409458 MEOX2P50222 304 aa10.67□□□□□ -0.7
GPNMB-203ENST00000409458 KLF5Q13887 457 aaPredicted RBP10.67□□□□□ -0.7
GPNMB-203ENST00000409458 C15orf54Q8N8G6 183 aa10.67□□□□□ -0.7
GPNMB-203ENST00000409458 TMEM75Q8N9X5 138 aa10.67□□□□□ -0.7
GPNMB-203ENST00000409458 OR1N2Q8NGR9 330 aa10.67□□□□□ -0.7
GPNMB-203ENST00000409458 PRELID1Q9Y255 219 aa10.67□□□□□ -0.7
GPNMB-203ENST00000409458 IGKV2-40A0A087WW87 121 aaPredicted RBP10.66□□□□□ -0.7
GPNMB-203ENST00000409458 A0A1W2PRX2 142 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 CXorf65A6NEN9 183 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 ZNF705FA8MVS1 300 aaPredicted RBP10.66□□□□□ -0.7
GPNMB-203ENST00000409458 H7BYZ3 331 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 IGKV2D-40P01614 121 aaPredicted RBP10.66□□□□□ -0.7
GPNMB-203ENST00000409458 CSN1S1P47710 185 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 CITED2Q99967 270 aaPredicted RBP10.66□□□□□ -0.7
GPNMB-203ENST00000409458 TMA7Q9Y2S6 64 aaKnown RBP10.66□□□□□ -0.7
GPNMB-203ENST00000409458 RNF114Q9Y508 228 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 URGCP-MRPS24S4R325 110 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 SOCS3O14543 225 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 PROK1P58294 105 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 PSG3Q16557 428 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 PRNTQ86SH4 94 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 FAM24BQ8N5W8 94 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 WFDC12Q8WWY7 111 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 ASCL2Q99929 193 aa10.66□□□□□ -0.7
GPNMB-203ENST00000409458 TRBV6-1A0A0K0K1D8 114 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 C2orf70A6NJV1 201 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 K7EQM0 130 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 FLI1Q01543 452 aaPredicted RBP10.65□□□□□ -0.7
GPNMB-203ENST00000409458 ELOBQ15370 118 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 LCN12Q6JVE5 192 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 TCF24Q7RTU0 167 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 ARL6IP6Q8N6S5 226 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 OR10G8Q8NGN5 311 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 DPF1Q92782 380 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 C16orf92Q96LL3 132 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 MLST8Q9BVC4 326 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 RNASE7Q9H1E1 156 aaKnown RBP10.65□□□□□ -0.7
GPNMB-203ENST00000409458 NRN1Q9NPD7 142 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 PSG8Q9UQ74 426 aa10.65□□□□□ -0.7
GPNMB-203ENST00000409458 IGKV3-7A0A075B6H7 116 aa10.64□□□□□ -0.71
GPNMB-203ENST00000409458 SERTM2A0A1B0GWG4 89 aa10.64□□□□□ -0.71
GPNMB-203ENST00000409458 PRAC2D3DTV9 90 aa10.64□□□□□ -0.71
GPNMB-203ENST00000409458 PPP1R2P9O14990 202 aa10.64□□□□□ -0.71
GPNMB-203ENST00000409458 BMI1P35226 326 aa10.64□□□□□ -0.71
GPNMB-203ENST00000409458 ERVFC1-1P60608 527 aa10.64□□□□□ -0.71
GPNMB-203ENST00000409458 RPL11P62913 178 aaKnown RBP10.64□□□□□ -0.71
GPNMB-203ENST00000409458 SMIM12Q96EX1 92 aa10.64□□□□□ -0.71
GPNMB-203ENST00000409458 RAX2Q96IS3 184 aa10.64□□□□□ -0.71
GPNMB-203ENST00000409458 C20orf173Q96LM9 149 aa10.64□□□□□ -0.71
GPNMB-203ENST00000409458 TSSC4Q9Y5U2 329 aaPredicted RBP10.64□□□□□ -0.71
GPNMB-203ENST00000409458 TGIF2-C20orf24A0A0A6YYL0 155 aa10.63□□□□□ -0.71
GPNMB-203ENST00000409458 CXCL1P09341 107 aa10.63□□□□□ -0.71
GPNMB-203ENST00000409458 CBLN1P23435 193 aa10.63□□□□□ -0.71
GPNMB-203ENST00000409458 PRR27Q6MZM9 219 aa10.63□□□□□ -0.71
GPNMB-203ENST00000409458 MRPL53Q96EL3 112 aaKnown RBP10.63□□□□□ -0.71
GPNMB-203ENST00000409458 FHL3Q13643 280 aa10.63□□□□□ -0.71
GPNMB-203ENST00000409458 IBA57Q5T440 356 aaKnown RBP10.63□□□□□ -0.71
GPNMB-203ENST00000409458 ADAMTSL5Q6ZMM2 481 aa10.63□□□□□ -0.71
GPNMB-203ENST00000409458 TMEM183AQ8IXX5 376 aa10.63□□□□□ -0.71
GPNMB-203ENST00000409458 DLX4Q92988 240 aaPredicted RBP10.63□□□□□ -0.71
GPNMB-203ENST00000409458 VGLL1Q99990 258 aa10.63□□□□□ -0.71
GPNMB-203ENST00000409458 OSTCQ9NRP0 149 aa10.63□□□□□ -0.71
GPNMB-203ENST00000409458 MLXQ9UH92 298 aa10.63□□□□□ -0.71
GPNMB-203ENST00000409458 V9GYV3 84 aa10.63□□□□□ -0.71
GPNMB-203ENST00000409458 PFN1P07737 140 aaKnown RBP10.62□□□□□ -0.71
GPNMB-203ENST00000409458 FOLR2P14207 255 aa10.62□□□□□ -0.71
GPNMB-203ENST00000409458 KRTAP10-3P60369 221 aa10.62□□□□□ -0.71
GPNMB-203ENST00000409458 LINC00322Q6ZN03 302 aaPredicted RBP10.62□□□□□ -0.71
GPNMB-203ENST00000409458 OR9G4Q8NGQ1 327 aa10.62□□□□□ -0.71
GPNMB-203ENST00000409458 Q8TAT8 98 aa10.62□□□□□ -0.71
GPNMB-203ENST00000409458 F8P00451 2351 aa10.61□□□□□ -0.71
GPNMB-203ENST00000409458 ERCC8Q13216 396 aa10.61□□□□□ -0.71
GPNMB-203ENST00000409458 FAM231DQ6ZW35 169 aa10.61□□□□□ -0.71
GPNMB-203ENST00000409458 GBGT1Q8N5D6 347 aa10.61□□□□□ -0.71
GPNMB-203ENST00000409458 DCANP1Q8TF63 244 aa10.61□□□□□ -0.71
GPNMB-203ENST00000409458 C8orf49Q96NF6 230 aa10.61□□□□□ -0.71
GPNMB-203ENST00000409458 ADARB2-AS1A8MUL3 147 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 CCL24O00175 119 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 RAB5AP20339 215 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 ZNF738Q8NE65 137 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 ZC2HC1AQ96GY0 325 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 MS4A6AQ9H2W1 248 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 CLEC5AQ9NY25 188 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 PEMTQ9UBM1 199 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 ZFP30Q9Y2G7 519 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 SETXQ7Z333 2677 aaKnown RBP10.6□□□□□ -0.71
GPNMB-203ENST00000409458 RBAKDNA6NC62 111 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 M0QZ24 198 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 S100PP25815 95 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 NUDT10Q8NFP7 164 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 NUDT11Q96G61 164 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 IMMP2LQ96T52 175 aa10.6□□□□□ -0.71
GPNMB-203ENST00000409458 IL36BQ9NZH7 164 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms