RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ZNF688P0C7X2 276 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 PRR7Q8TB68 274 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 C8orf49Q96NF6 230 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 PROK2Q9HC23 129 aa7.49□□□□□ -1.21
COL28A1-201ENST00000399429 EML6Q6ZMW3 1958 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 FAM90A27PA6NNH2 459 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 PATE3B3GLJ2 98 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 PLNP26678 52 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 INSL3P51460 131 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 MEIG1Q5JSS6 88 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 C17orf82Q86X59 251 aaPredicted RBP7.48□□□□□ -1.21
COL28A1-201ENST00000399429 HLA-DRB4P13762 266 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 LINC00322Q6ZN03 302 aaPredicted RBP7.48□□□□□ -1.21
COL28A1-201ENST00000399429 PPP1R27Q86WC6 154 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 RNF125Q96EQ8 232 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 ERG28Q9UKR5 140 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 HLA-DRB4X5D2U9 266 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.48□□□□□ -1.21
COL28A1-201ENST00000399429 IGHV3-64A0A075B6Q5 118 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 EPOPA6NHQ4 379 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 SRRM4A7MD48 611 aaKnown RBP7.48□□□□□ -1.21
COL28A1-201ENST00000399429 PRRG2O14669 202 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 UFSP1Q6NVU6 142 aa7.48□□□□□ -1.21
COL28A1-201ENST00000399429 Q8TCH9 128 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 FAM167A-AS1Q96KT0 104 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 SRRM5B3KS81 715 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 Q6ZT83 130 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 TDHQ8IZJ6 230 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 TRAV12-3A0A0B4J271 114 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 A0A1B0GXF2 115 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 H7C1H1 209 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 KLRD1Q13241 179 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 ZNF56Q15929 161 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 LAMA2P24043 3122 aaKnown RBP7.47□□□□□ -1.21
COL28A1-201ENST00000399429 ABCA4P78363 2273 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 C15orf65H3BRN8 121 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 P0C879 139 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 EFNA4P52798 201 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 MFAP4P55083 255 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 MBD6Q96DN6 1003 aa7.47□□□□□ -1.21
COL28A1-201ENST00000399429 WT1-ASQ06250 92 aa7.46□□□□□ -1.21
COL28A1-201ENST00000399429 MYMXA0A1B0GTQ4 84 aa7.46□□□□□ -1.22
COL28A1-201ENST00000399429 SLC25A16P16260 332 aa7.46□□□□□ -1.22
COL28A1-201ENST00000399429 PATE2Q6UY27 113 aa7.46□□□□□ -1.22
COL28A1-201ENST00000399429 ZCCHC24Q8N2G6 241 aaKnown RBP7.46□□□□□ -1.22
COL28A1-201ENST00000399429 TRGV9Q99603 122 aa7.46□□□□□ -1.22
COL28A1-201ENST00000399429 DEFB109BQ30KR1 87 aa7.46□□□□□ -1.22
COL28A1-201ENST00000399429 Q6ZUT4 128 aa7.46□□□□□ -1.22
COL28A1-201ENST00000399429 ARRDC1-AS1Q9H2J1 176 aa7.46□□□□□ -1.22
COL28A1-201ENST00000399429 LAMA3Q16787 3333 aa7.46□□□□□ -1.22
COL28A1-201ENST00000399429 FAM74A4Q5TZK3 123 aa7.45□□□□□ -1.22
COL28A1-201ENST00000399429 ABHD17AQ96GS6 310 aa7.45□□□□□ -1.22
COL28A1-201ENST00000399429 COL6A6A6NMZ7 2263 aa7.45□□□□□ -1.22
COL28A1-201ENST00000399429 A0A1W2PPI3 338 aa7.45□□□□□ -1.22
COL28A1-201ENST00000399429 IGLV3-19P01714 112 aa7.45□□□□□ -1.22
COL28A1-201ENST00000399429 PMS2CLQ68D20 193 aa7.45□□□□□ -1.22
COL28A1-201ENST00000399429 C2orf82Q6UX34 121 aa7.45□□□□□ -1.22
COL28A1-201ENST00000399429 Q8N7P7 452 aa7.45□□□□□ -1.22
COL28A1-201ENST00000399429 GATA1P15976 413 aaPredicted RBP7.45□□□□□ -1.22
COL28A1-201ENST00000399429 TIMD4Q96H15 378 aa7.45□□□□□ -1.22
COL28A1-201ENST00000399429 C17orf77Q96MU5 243 aa7.45□□□□□ -1.22
COL28A1-201ENST00000399429 KIR2DL4Q99706 377 aa7.45□□□□□ -1.22
COL28A1-201ENST00000399429 NDUFA4L2Q9NRX3 87 aa7.45□□□□□ -1.22
COL28A1-201ENST00000399429 TRAV26-2A0A0B4J265 109 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 SLC25A20O43772 301 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 FGF6P10767 208 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 DAZAP2Q15038 168 aaPredicted RBP7.44□□□□□ -1.22
COL28A1-201ENST00000399429 FAM90A1Q86YD7 464 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 OR11H6Q8NGC7 330 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 URB1-AS1Q96HZ7 61 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 HTN1P15515 57 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 ECSCRQ19T08 205 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 SAP25Q8TEE9 199 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 NTN5Q8WTR8 489 aaPredicted RBP7.44□□□□□ -1.22
COL28A1-201ENST00000399429 C16orf92Q96LL3 132 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 PRADC1Q9BSG0 188 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 TM4SF5O14894 197 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 ADIPOQQ15848 244 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 LINC01559Q495D7 138 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 ORMDL2Q53FV1 153 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 C9orf153Q5TBE3 101 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 TMEM75Q8N9X5 138 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 TMEM167AQ8TBQ9 72 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 TANC2Q9HCD6 1990 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 VWC2LB2RUY7 222 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 PRSS46E5RG02 174 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 TAL2Q16559 108 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 DUX4L9Q6RFH8 374 aaPredicted RBP7.44□□□□□ -1.22
COL28A1-201ENST00000399429 C15orf53Q8NAA6 179 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 LINC00312Q9Y6C7 94 aa7.44□□□□□ -1.22
COL28A1-201ENST00000399429 IGKV2D-26A0A0A0MRZ7 120 aa7.43□□□□□ -1.22
COL28A1-201ENST00000399429 TRBV7-9A0A0J9YWB2 115 aa7.43□□□□□ -1.22
COL28A1-201ENST00000399429 PROP1O75360 226 aa7.43□□□□□ -1.22
COL28A1-201ENST00000399429 TEN1Q86WV5 123 aa7.43□□□□□ -1.22
COL28A1-201ENST00000399429 NPC2P61916 151 aa7.43□□□□□ -1.22
COL28A1-201ENST00000399429 SMRP1Q8NCR6 262 aa7.43□□□□□ -1.22
COL28A1-201ENST00000399429 HCFC1P51610 2035 aa7.43□□□□□ -1.22
COL28A1-201ENST00000399429 KRTAP27-1Q3LI81 207 aa7.43□□□□□ -1.22
COL28A1-201ENST00000399429 ATP1A1-AS1Q5TC04 95 aa7.43□□□□□ -1.22
COL28A1-201ENST00000399429 RAB1BQ9H0U4 201 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms