RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 KIR3DS1Q14943 382 aa12.13□□□□□ -0.47
NPHP4-201ENST00000378156 PLA2G2EQ9NZK7 142 aa12.13□□□□□ -0.47
NPHP4-201ENST00000378156 A0A1B0GUS0 222 aa12.13□□□□□ -0.47
NPHP4-201ENST00000378156 EREGO14944 169 aa12.13□□□□□ -0.47
NPHP4-201ENST00000378156 SP5Q6BEB4 398 aaPredicted RBP12.13□□□□□ -0.47
NPHP4-201ENST00000378156 GTSCR1Q86UQ5 136 aa12.13□□□□□ -0.47
NPHP4-201ENST00000378156 PLEKHB2Q96CS7 222 aa12.13□□□□□ -0.47
NPHP4-201ENST00000378156 D6R8Y8 96 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 GTSF1LQ9H1H1 148 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 TRGV2A0A075B6R0 118 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 TRBV7-1A0A0A6YYK4 115 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 TCRAP04437 139 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 NUP35Q8NFH5 326 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 LYPD6BQ8NI32 183 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 A0A1W2PPI3 338 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 FNDC10F2Z333 226 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 EVI2AP22794 236 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 LOXP28300 417 aaPredicted RBP12.12□□□□□ -0.47
NPHP4-201ENST00000378156 ZNF562Q6V9R5 426 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 ALPK3Q96L96 1907 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 PCDH15Q96QU1 1955 aa12.12□□□□□ -0.47
NPHP4-201ENST00000378156 LINC01356Q8N9X3 169 aa12.11□□□□□ -0.47
NPHP4-201ENST00000378156 NAA38Q9BRA0 125 aaKnown RBP12.11□□□□□ -0.47
NPHP4-201ENST00000378156 TRAV8-1A0A0A6YYK1 113 aa12.11□□□□□ -0.47
NPHP4-201ENST00000378156 CD28P10747 220 aa12.11□□□□□ -0.47
NPHP4-201ENST00000378156 ZNF134P52741 427 aa12.11□□□□□ -0.47
NPHP4-201ENST00000378156 ZNF329Q86UD4 541 aa12.11□□□□□ -0.47
NPHP4-201ENST00000378156 SRSF8Q9BRL6 282 aaKnown RBP12.11□□□□□ -0.47
NPHP4-201ENST00000378156 TMEM14BQ9NUH8 114 aa12.11□□□□□ -0.47
NPHP4-201ENST00000378156 IGHV2-5P01817 119 aa12.11□□□□□ -0.47
NPHP4-201ENST00000378156 UBE2E1P51965 193 aa12.11□□□□□ -0.47
NPHP4-201ENST00000378156 IGFL2Q6UWQ7 119 aa12.11□□□□□ -0.47
NPHP4-201ENST00000378156 IGKV2-40A0A087WW87 121 aaPredicted RBP12.11□□□□□ -0.47
NPHP4-201ENST00000378156 IGKV2D-40P01614 121 aaPredicted RBP12.11□□□□□ -0.47
NPHP4-201ENST00000378156 Q6ZSR3 168 aa12.11□□□□□ -0.47
NPHP4-201ENST00000378156 USMG5Q96IX5 58 aa12.11□□□□□ -0.47
NPHP4-201ENST00000378156 MED13Q9UHV7 2174 aa12.1□□□□□ -0.47
NPHP4-201ENST00000378156 C15orf65H3BRN8 121 aa12.1□□□□□ -0.47
NPHP4-201ENST00000378156 MSMBP08118 114 aa12.1□□□□□ -0.47
NPHP4-201ENST00000378156 C17orf58Q2M2W7 97 aa12.1□□□□□ -0.47
NPHP4-201ENST00000378156 TEX36Q5VZQ5 186 aa12.1□□□□□ -0.47
NPHP4-201ENST00000378156 IGHV2-70P01814 119 aa12.1□□□□□ -0.47
NPHP4-201ENST00000378156 TMEM249Q2WGJ8 235 aa12.1□□□□□ -0.47
NPHP4-201ENST00000378156 K7EM74 188 aa12.1□□□□□ -0.47
NPHP4-201ENST00000378156 TRGV11A0A075B6L2 103 aa12.09□□□□□ -0.47
NPHP4-201ENST00000378156 TMEM86BQ8N661 226 aa12.09□□□□□ -0.47
NPHP4-201ENST00000378156 POLR3KQ9Y2Y1 108 aaPredicted RBP12.09□□□□□ -0.47
NPHP4-201ENST00000378156 KIAA1549LQ6ZVL6 1849 aa12.09□□□□□ -0.47
NPHP4-201ENST00000378156 OCIAD2Q56VL3 154 aa12.09□□□□□ -0.47
NPHP4-201ENST00000378156 IGF2-ASQ6U949 168 aa12.09□□□□□ -0.47
NPHP4-201ENST00000378156 LYPD1Q8N2G4 141 aa12.09□□□□□ -0.47
NPHP4-201ENST00000378156 SELENOKQ9Y6D0 94 aa12.09□□□□□ -0.47
NPHP4-201ENST00000378156 LGALS1P09382 135 aaKnown RBP12.09□□□□□ -0.47
NPHP4-201ENST00000378156 S100A7L2Q5SY68 101 aa12.09□□□□□ -0.47
NPHP4-201ENST00000378156 LYZL1Q6UWQ5 148 aa12.09□□□□□ -0.47
NPHP4-201ENST00000378156 NDPQ00604 133 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 C9orf139Q6ZV77 190 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 PIP4P2Q8N4L2 257 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 ZNF114Q8NC26 417 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 WFDC12Q8WWY7 111 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 SNHG12Q9BXW3 62 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 OTOGLQ3ZCN5 2332 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 CSPG4Q6UVK1 2322 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 MMP23AO75900 390 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 PCNX3Q9H6A9 2034 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 RNF223E7ERA6 249 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 SPINK8P0C7L1 97 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 GATA3P23771 443 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 DMRTC2Q8IXT2 367 aaPredicted RBP12.08□□□□□ -0.48
NPHP4-201ENST00000378156 ZNF688P0C7X2 276 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 C2orf82Q6UX34 121 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 CST9LQ9H4G1 147 aa12.08□□□□□ -0.48
NPHP4-201ENST00000378156 TOMM40O96008 361 aa12.07□□□□□ -0.48
NPHP4-201ENST00000378156 NSUN5P1Q3KNT7 163 aa12.07□□□□□ -0.48
NPHP4-201ENST00000378156 KRTAP27-1Q3LI81 207 aa12.07□□□□□ -0.48
NPHP4-201ENST00000378156 ZC2HC1BQ5TFG8 222 aa12.07□□□□□ -0.48
NPHP4-201ENST00000378156 GFRA4Q9GZZ7 299 aa12.07□□□□□ -0.48
NPHP4-201ENST00000378156 ZNF833PQ6ZTB9 187 aa12.07□□□□□ -0.48
NPHP4-201ENST00000378156 CENPFP49454 3210 aa12.07□□□□□ -0.48
NPHP4-201ENST00000378156 ZNF138P52744 262 aa12.07□□□□□ -0.48
NPHP4-201ENST00000378156 PSG3Q16557 428 aa12.07□□□□□ -0.48
NPHP4-201ENST00000378156 NDUFA4L2Q9NRX3 87 aa12.07□□□□□ -0.48
NPHP4-201ENST00000378156 ADAMTSL5Q6ZMM2 481 aa12.07□□□□□ -0.48
NPHP4-201ENST00000378156 LINC00311Q8N616 119 aa12.07□□□□□ -0.48
NPHP4-201ENST00000378156 NCR2O95944 276 aa12.06□□□□□ -0.48
NPHP4-201ENST00000378156 UTRNP46939 3433 aa12.06□□□□□ -0.48
NPHP4-201ENST00000378156 FAM223BA6NKX1 122 aa12.06□□□□□ -0.48
NPHP4-201ENST00000378156 MAJINQ3KP22 176 aa12.06□□□□□ -0.48
NPHP4-201ENST00000378156 FAM223AQ8IWN6 122 aa12.06□□□□□ -0.48
NPHP4-201ENST00000378156 GAGE1Q13065 139 aa12.06□□□□□ -0.48
NPHP4-201ENST00000378156 RUSC1-AS1Q66K80 236 aa12.06□□□□□ -0.48
NPHP4-201ENST00000378156 C11orf53Q8IXP5 236 aa12.06□□□□□ -0.48
NPHP4-201ENST00000378156 OVOL2Q9BRP0 275 aa12.06□□□□□ -0.48
NPHP4-201ENST00000378156 CHAC1Q9BUX1 264 aa12.06□□□□□ -0.48
NPHP4-201ENST00000378156 CRPP02741 224 aa12.06□□□□□ -0.48
NPHP4-201ENST00000378156 HTN3P15516 51 aa12.06□□□□□ -0.48
NPHP4-201ENST00000378156 IGHV1-69DA0A0B4J2H0 117 aa12.05□□□□□ -0.48
NPHP4-201ENST00000378156 FAM231BA6NCW3 169 aa12.05□□□□□ -0.48
NPHP4-201ENST00000378156 TNFRSF6BO95407 300 aa12.05□□□□□ -0.48
NPHP4-201ENST00000378156 IGHV1-69P01742 117 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms