RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 GREM1O60565 184 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 BVES-AS1Q5T3Y7 98 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 SIGLEC9Q9Y336 463 aa8.68□□□□□ -1.02
RTN3-206ENST00000377819 DKK1O94907 266 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 PFN1P07737 140 aaKnown RBP8.67□□□□□ -1.02
RTN3-206ENST00000377819 IGHV1-8P0DP01 117 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 BOD1L2Q8IYS8 172 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 SLC22A18ASQ8N1D0 253 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 CARD19Q96LW7 228 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 MRPL27Q9P0M9 148 aaKnown RBP8.67□□□□□ -1.02
RTN3-206ENST00000377819 SCN4AP35499 1836 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 CKAP5Q14008 2032 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 C1orf194Q5T5A4 169 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 TREML4Q6UXN2 200 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 AMN1Q8IY45 258 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 TMEM242Q9NWH2 141 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 CSPG4Q6UVK1 2322 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 BDP1A6H8Y1 2624 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 HERVK_113P63121 156 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 ZNF362Q5T0B9 420 aaPredicted RBP8.67□□□□□ -1.02
RTN3-206ENST00000377819 IGF2BP2-AS1Q96M15 143 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 PRO1854Q9UHT4 67 aa8.67□□□□□ -1.02
RTN3-206ENST00000377819 IGHV4-28A0A0C4DH34 117 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 SDHAF1A6NFY7 115 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 TBX6O95947 436 aaPredicted RBP8.66□□□□□ -1.02
RTN3-206ENST00000377819 IGHG2P01859 326 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 C3orf79P0CE67 100 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 UBE2AP49459 152 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 SPINK13Q1W4C9 94 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 MRPS18CQ9Y3D5 142 aaKnown RBP8.66□□□□□ -1.02
RTN3-206ENST00000377819 SHISA9B4DS77 424 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 IGHV1-46P01743 117 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 ORMDL1Q9P0S3 153 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 CHCHD2Q9Y6H1 151 aaPredicted RBP8.66□□□□□ -1.02
RTN3-206ENST00000377819 UBE2CO00762 179 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 PRB1P04280 392 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 PDE6HQ13956 83 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 FAM219BQ5XKK7 198 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 ZNF497Q6ZNH5 498 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 AGMATQ9BSE5 352 aa8.66□□□□□ -1.02
RTN3-206ENST00000377819 CTHRC1Q96CG8 243 aa8.65□□□□□ -1.02
RTN3-206ENST00000377819 COL4A4P53420 1690 aaPredicted RBP8.65□□□□□ -1.02
RTN3-206ENST00000377819 IGHV1OR15-1A0A075B7D0 117 aa8.65□□□□□ -1.02
RTN3-206ENST00000377819 SRRM5B3KS81 715 aa8.65□□□□□ -1.02
RTN3-206ENST00000377819 LINC01619G3V211 115 aa8.65□□□□□ -1.02
RTN3-206ENST00000377819 CELA3BP08861 270 aa8.65□□□□□ -1.02
RTN3-206ENST00000377819 RTBDNQ9BSG5 229 aaPredicted RBP8.65□□□□□ -1.02
RTN3-206ENST00000377819 IGKV1D-13A0A0B4J2D9 117 aa8.65□□□□□ -1.02
RTN3-206ENST00000377819 IGKV1-13P0DP09 117 aa8.65□□□□□ -1.02
RTN3-206ENST00000377819 SPATA31B1PQ5VZV4 182 aa8.65□□□□□ -1.02
RTN3-206ENST00000377819 Q6ZWC4 215 aa8.65□□□□□ -1.02
RTN3-206ENST00000377819 KIAA1217Q5T5P2 1943 aa8.65□□□□□ -1.03
RTN3-206ENST00000377819 CFHR2P36980 270 aa8.65□□□□□ -1.03
RTN3-206ENST00000377819 VSIG2Q96IQ7 327 aa8.65□□□□□ -1.03
RTN3-206ENST00000377819 LY96Q9Y6Y9 160 aa8.65□□□□□ -1.03
RTN3-206ENST00000377819 A6NNC1 897 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 CAMK2N2Q96S95 79 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 MPZP25189 248 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 MRPL55Q7Z7F7 128 aaKnown RBP8.64□□□□□ -1.03
RTN3-206ENST00000377819 SPACA3Q8IXA5 215 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 CFHR4Q92496 578 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 SSC5DA1L4H1 1573 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 ZNFX1Q9P2E3 1918 aaKnown RBP8.64□□□□□ -1.03
RTN3-206ENST00000377819 RS1O15537 224 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 RAMP3O60896 148 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 RHOHQ15669 191 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 NUP35Q8NFH5 326 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 FANCD2OSQ96PS1 177 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 KLHDC3Q9BQ90 382 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 HIVEP2P31629 2446 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 ATP6V0BQ99437 205 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 SPATA25Q9BR10 227 aa8.64□□□□□ -1.03
RTN3-206ENST00000377819 PLXNA1Q9UIW2 1896 aa8.63□□□□□ -1.03
RTN3-206ENST00000377819 IGKV1-8A0A0C4DH67 115 aa8.63□□□□□ -1.03
RTN3-206ENST00000377819 SMKR1H3BMG3 65 aa8.63□□□□□ -1.03
RTN3-206ENST00000377819 PRB4P10163 310 aaPredicted RBP8.63□□□□□ -1.03
RTN3-206ENST00000377819 IGLV3-21P80748 117 aaPredicted RBP8.63□□□□□ -1.03
RTN3-206ENST00000377819 GPR179Q6PRD1 2367 aa8.63□□□□□ -1.03
RTN3-206ENST00000377819 TRIP11Q15643 1979 aa8.63□□□□□ -1.03
RTN3-206ENST00000377819 IGHV1-24A0A0C4DH33 117 aa8.63□□□□□ -1.03
RTN3-206ENST00000377819 FOXF2Q12947 444 aa8.63□□□□□ -1.03
RTN3-206ENST00000377819 FOXE3Q13461 319 aa8.63□□□□□ -1.03
RTN3-206ENST00000377819 RNF222A6NCQ9 220 aa8.63□□□□□ -1.03
RTN3-206ENST00000377819 F8W1H4 67 aa8.63□□□□□ -1.03
RTN3-206ENST00000377819 NTN3O00634 580 aaPredicted RBP8.63□□□□□ -1.03
RTN3-206ENST00000377819 GZMMP51124 257 aa8.63□□□□□ -1.03
RTN3-206ENST00000377819 TM2D2Q9BX73 214 aa8.63□□□□□ -1.03
RTN3-206ENST00000377819 TSSC4Q9Y5U2 329 aaPredicted RBP8.63□□□□□ -1.03
RTN3-206ENST00000377819 LMO1P25800 156 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 RPL18AQ02543 176 aaKnown RBP8.62□□□□□ -1.03
RTN3-206ENST00000377819 SPTSSBQ8NFR3 76 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 OPRPNQ99935 248 aaPredicted RBP8.62□□□□□ -1.03
RTN3-206ENST00000377819 THSD7BQ9C0I4 1608 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 HIVEP3Q5T1R4 2406 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 A0A096LPF7 62 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 H3BQ85 93 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 CDKN1BP46527 198 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 GPHB5Q86YW7 130 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 RPP25LQ8N5L8 163 aaKnown RBP8.62□□□□□ -1.03
RTN3-206ENST00000377819 SRSF8Q9BRL6 282 aaKnown RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 147.2 ms