RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 DPF1Q92782 380 aa11.13□□□□□ -0.63
CD48-201ENST00000368045 PRELID3AQ96N28 172 aa11.13□□□□□ -0.63
CD48-201ENST00000368045 ASCL2Q99929 193 aa11.13□□□□□ -0.63
CD48-201ENST00000368045 C12orf54Q6X4T0 127 aa11.13□□□□□ -0.63
CD48-201ENST00000368045 SMAD5-AS1Q9Y6J3 95 aa11.13□□□□□ -0.63
CD48-201ENST00000368045 D6R8Y8 96 aa11.12□□□□□ -0.63
CD48-201ENST00000368045 IGLC6P0CF74 106 aa11.12□□□□□ -0.63
CD48-201ENST00000368045 ZFP36P26651 326 aaKnown RBP11.12□□□□□ -0.63
CD48-201ENST00000368045 UBE2E1P51965 193 aa11.12□□□□□ -0.63
CD48-201ENST00000368045 UNQ5815/PRO19632Q6UWF5 114 aa11.12□□□□□ -0.63
CD48-201ENST00000368045 FER1L6-AS1Q8NA97 138 aa11.12□□□□□ -0.63
CD48-201ENST00000368045 ZNF502Q8TBZ5 544 aa11.12□□□□□ -0.63
CD48-201ENST00000368045 NPFFR1Q9GZQ6 430 aa11.12□□□□□ -0.63
CD48-201ENST00000368045 SIGLEC8Q9NYZ4 499 aa11.12□□□□□ -0.63
CD48-201ENST00000368045 ABCA1O95477 2261 aa11.12□□□□□ -0.63
CD48-201ENST00000368045 PIEZO2Q9H5I5 2752 aa11.12□□□□□ -0.63
CD48-201ENST00000368045 TMEM213A2RRL7 107 aa11.11□□□□□ -0.63
CD48-201ENST00000368045 RBAKDNA6NC62 111 aa11.11□□□□□ -0.63
CD48-201ENST00000368045 IGHV3-23P01764 117 aa11.11□□□□□ -0.63
CD48-201ENST00000368045 MUC6Q6W4X9 2439 aa11.11□□□□□ -0.63
CD48-201ENST00000368045 TLN1Q9Y490 2541 aaKnown RBP11.11□□□□□ -0.63
CD48-201ENST00000368045 TMSB15BA0A087X1C1 80 aa11.11□□□□□ -0.63
CD48-201ENST00000368045 IGHV2-70DA0A0C4DH43 119 aa11.11□□□□□ -0.63
CD48-201ENST00000368045 IGHG4P01861 327 aa11.11□□□□□ -0.63
CD48-201ENST00000368045 IFI27P40305 119 aaPredicted RBP11.11□□□□□ -0.63
CD48-201ENST00000368045 UBE2V1Q13404 147 aa11.11□□□□□ -0.63
CD48-201ENST00000368045 MRPL51Q4U2R6 128 aaKnown RBP11.11□□□□□ -0.63
CD48-201ENST00000368045 TCF21O43680 179 aa11.1□□□□□ -0.63
CD48-201ENST00000368045 COX8AP10176 69 aa11.1□□□□□ -0.63
CD48-201ENST00000368045 HIST1H1AQ02539 215 aaPredicted RBP11.1□□□□□ -0.63
CD48-201ENST00000368045 LGALS9BQ3B8N2 356 aa11.1□□□□□ -0.63
CD48-201ENST00000368045 LGALS9CQ6DKI2 356 aa11.1□□□□□ -0.63
CD48-201ENST00000368045 AMN1Q8IY45 258 aa11.1□□□□□ -0.63
CD48-201ENST00000368045 VGLL1Q99990 258 aa11.1□□□□□ -0.63
CD48-201ENST00000368045 SLC50A1Q9BRV3 221 aa11.1□□□□□ -0.63
CD48-201ENST00000368045 CNFNQ9BYD5 112 aa11.1□□□□□ -0.63
CD48-201ENST00000368045 A0A096LNJ9 63 aa11.09□□□□□ -0.63
CD48-201ENST00000368045 FABP5P3A8MUU1 101 aa11.09□□□□□ -0.63
CD48-201ENST00000368045 GOSR1O95249 250 aa11.09□□□□□ -0.63
CD48-201ENST00000368045 PPBPP02775 128 aa11.09□□□□□ -0.63
CD48-201ENST00000368045 PTTG1IPP53801 180 aa11.09□□□□□ -0.63
CD48-201ENST00000368045 MPV17L2Q567V2 206 aa11.09□□□□□ -0.63
CD48-201ENST00000368045 BVES-AS1Q5T3Y7 98 aa11.09□□□□□ -0.63
CD48-201ENST00000368045 ZFAND3Q9H8U3 227 aa11.09□□□□□ -0.63
CD48-201ENST00000368045 PTPRQQ9UMZ3 2332 aa11.09□□□□□ -0.63
CD48-201ENST00000368045 SMG1Q96Q15 3661 aaKnown RBP11.08□□□□□ -0.63
CD48-201ENST00000368045 NUDT3O95989 172 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 HBDP02042 147 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 C15orf32Q32M92 178 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 OR1N2Q8NGR9 330 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 MRPL53Q96EL3 112 aaKnown RBP11.08□□□□□ -0.64
CD48-201ENST00000368045 RAXQ9Y2V3 346 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 LAMA5O15230 3695 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 ADGRG4Q8IZF6 3080 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 H0Y8G0 127 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 GPR183P32249 361 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 CKS2P33552 79 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 ZNF80P51504 273 aaPredicted RBP11.08□□□□□ -0.64
CD48-201ENST00000368045 RHOGP84095 191 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 PAX8Q06710 450 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 TWIST1Q15672 202 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 LINC01559Q495D7 138 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 DEFB125Q8N687 156 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 Q8TAT8 98 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 AJUBAQ96IF1 538 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 ATP6V0BQ99437 205 aa11.08□□□□□ -0.64
CD48-201ENST00000368045 CCL25O15444 150 aa11.07□□□□□ -0.64
CD48-201ENST00000368045 BUB3O43684 328 aa11.07□□□□□ -0.64
CD48-201ENST00000368045 EFNA4P52798 201 aa11.07□□□□□ -0.64
CD48-201ENST00000368045 TRBV7-1A0A0A6YYK4 115 aa11.06□□□□□ -0.64
CD48-201ENST00000368045 LOC389332A0A1B0GUA5 103 aa11.06□□□□□ -0.64
CD48-201ENST00000368045 LINC01546A6NGU7 62 aa11.06□□□□□ -0.64
CD48-201ENST00000368045 NCR2O95944 276 aa11.06□□□□□ -0.64
CD48-201ENST00000368045 PRB4P10163 310 aaPredicted RBP11.06□□□□□ -0.64
CD48-201ENST00000368045 PSMG4Q5JS54 123 aa11.06□□□□□ -0.64
CD48-201ENST00000368045 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.06□□□□□ -0.64
CD48-201ENST00000368045 EEF1AKMT3Q96AZ1 226 aa11.06□□□□□ -0.64
CD48-201ENST00000368045 PSMG3-AS1Q96PY0 264 aa11.06□□□□□ -0.64
CD48-201ENST00000368045 MCRIP2Q9BUT9 160 aaKnown RBP11.06□□□□□ -0.64
CD48-201ENST00000368045 HIF1ANQ9NWT6 349 aa11.06□□□□□ -0.64
CD48-201ENST00000368045 TIMM8BQ9Y5J9 83 aaPredicted RBP11.06□□□□□ -0.64
CD48-201ENST00000368045 TPRP12270 2363 aaKnown RBP11.06□□□□□ -0.64
CD48-201ENST00000368045 ATMQ13315 3056 aa11.06□□□□□ -0.64
CD48-201ENST00000368045 ATP6V0E1O15342 81 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 ORM1P02763 201 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 CLEC3BP05452 202 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 HLA-DMBP28068 263 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 LOXL1Q08397 574 aaPredicted RBP11.05□□□□□ -0.64
CD48-201ENST00000368045 ECSCRQ19T08 205 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 FAM106AQ4KMX7 169 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 TAX1BP3O14907 124 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 CD5LO43866 347 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 NPYP01303 97 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 SAA4P35542 130 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 ZNF575Q86XF7 245 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 OR8A1Q8NGG7 326 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 MAP1LC3AQ9H492 121 aa11.05□□□□□ -0.64
CD48-201ENST00000368045 IFI27L1Q96BM0 104 aa11.04□□□□□ -0.64
CD48-201ENST00000368045 RNF185Q96GF1 192 aa11.04□□□□□ -0.64
CD48-201ENST00000368045 CCDC140Q96MF4 163 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms