RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 TNXBP22105 4242 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 TRAV8-2A0A0B4J237 113 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 C9orf170A2RU37 121 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 C7orf66A4D0T2 115 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 C5orf52A6NGY3 159 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 C1orf196B1AJZ1 125 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 H3BNG1 76 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 ISLRO14498 428 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 TCAPO15273 167 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 SCGNO76038 276 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 LINC00614P0C842 121 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 RD3LP0DJH9 198 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 HTN1P15515 57 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 RAB5CP51148 216 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 SUMO1P63165 101 aaKnown RBP5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 Q6ZSA8 131 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 CMTM1Q8IZ96 169 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 ARRDC1Q8N5I2 433 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 KRTAP4-2Q9BYR5 136 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 ANAPC10Q9UM13 185 aa5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 TIMM8BQ9Y5J9 83 aaPredicted RBP5.69□□□□□ -1.5
HMGB1P39-201ENST00000366304 A0A0A6YYH2 397 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 GAGE12BA1L429 117 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 TMEM218A2RU14 115 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 A6NJ64 397 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 PRSS47A8MTI9 375 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 LYRM1O43325 122 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 PRAF2O60831 178 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 GAGE7O76087 117 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 MBP02144 154 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 APOC3P02656 99 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 OR4E1P0C645 316 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 GAGE12FP0CL80 117 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 GAGE12GP0CL81 117 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 GAGE12IP0CL82 117 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 UCP1P25874 307 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 HNRNPA3P51991 378 aaKnown RBP5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 SUB1P53999 127 aaKnown RBP eCLIP5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 TAS2R20P59543 309 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 ZNF90Q03938 601 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 GAGE1Q13065 139 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 OPCMLQ14982 345 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 LGALSLQ3ZCW2 172 aaPredicted RBP5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 UBE2NLQ5JXB2 153 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 MZT2AQ6P582 158 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 TMED4Q7Z7H5 227 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 RNF182Q8N6D2 247 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 SAMD12Q8N8I0 201 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 ACY3Q96HD9 319 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 LINC01587Q99440 93 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 PBDC1Q9BVG4 233 aa5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 FAM212BQ9NTI7 297 aaPredicted RBP5.68□□□□□ -1.5
HMGB1P39-201ENST00000366304 IGKV1D-37A0A075B6S9 117 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 C9orf118A6NHY6 69 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 HMSDA8MTL9 139 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 PLA2G10O15496 165 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 GSTZ1O43708 216 aaPredicted RBP5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 ASIPP42127 132 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 NHLH2Q02577 135 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 PYDC2Q56P42 97 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 RNASE10Q5GAN6 216 aaKnown RBP5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 MRPL52Q86TS9 123 aaKnown RBP5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 NFE4Q86UQ8 179 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 IL22RA2Q969J5 263 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 RRNAD1Q96FB5 475 aaKnown RBP5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 TP53RKQ96S44 253 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 KRTAP4-11Q9BYQ6 195 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 RPRMQ9NS64 109 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 V9GYH0 126 aa5.67□□□□□ -1.5
HMGB1P39-201ENST00000366304 TSTD3H0UI37 97 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 HPGDSO60760 199 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 ATG12O94817 140 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 NMBP08949 121 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 PKIAP61925 76 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 EIF5AP63241 154 aaKnown RBP5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 SUPT4H1P63272 117 aaKnown RBP5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 TMEM144Q7Z5S9 345 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 C15orf54Q8N8G6 183 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 NUDT10Q8NFP7 164 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 OR10J6PQ8NGY7 276 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 S100A16Q96FQ6 103 aaKnown RBP5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 NUDT11Q96G61 164 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 C16orf74Q96GX8 76 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 DIRAS2Q96HU8 199 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 SOSTQ9BQB4 213 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 MSRB1Q9NZV6 116 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 COMMD3Q9UBI1 195 aa5.66□□□□□ -1.5
HMGB1P39-201ENST00000366304 SCGB2A1O75556 95 aa5.65□□□□□ -1.5
HMGB1P39-201ENST00000366304 MPC2O95563 127 aa5.65□□□□□ -1.5
HMGB1P39-201ENST00000366304 SULT1A3P0DMM9 295 aa5.65□□□□□ -1.5
HMGB1P39-201ENST00000366304 SULT1A4P0DMN0 295 aa5.65□□□□□ -1.5
HMGB1P39-201ENST00000366304 SLC25A4P12235 298 aa5.65□□□□□ -1.5
HMGB1P39-201ENST00000366304 ANXA7P20073 488 aaKnown RBP5.65□□□□□ -1.5
HMGB1P39-201ENST00000366304 HRH1P35367 487 aa5.65□□□□□ -1.5
HMGB1P39-201ENST00000366304 RAP2BP61225 183 aa5.65□□□□□ -1.5
HMGB1P39-201ENST00000366304 WFDC2Q14508 124 aa5.65□□□□□ -1.5
HMGB1P39-201ENST00000366304 C2orf83Q53S99 150 aa5.65□□□□□ -1.5
HMGB1P39-201ENST00000366304 C10orf91Q5T1B1 145 aa5.65□□□□□ -1.5
HMGB1P39-201ENST00000366304 C1orf194Q5T5A4 169 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms