RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 TRAV3A0A0B4J244 114 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 LY6G6FQ5SQ64 297 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 FGFBP3Q8TAT2 258 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 GTSF1LQ9H1H1 148 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 SIGLEC9Q9Y336 463 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 H0YIZ8 118 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 MORN5Q5VZ52 161 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 NUP35Q8NFH5 326 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 TINCRA0A1B0GVN0 87 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 KIR3DS1Q14943 382 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 TMEM141Q96I45 108 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 FRMPD3Q5JV73 1810 aa8.25□□□□□ -1.09
CLIP1-202ENST00000358808 IGHV4-4A0A075B6R2 117 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HIST1H2BKO60814 126 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HIST1H2BJP06899 126 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HIST1H2BOP23527 126 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HIST1H2BBP33778 126 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HIST1H2BDP58876 126 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HIST1H2BCP62807 126 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 ZNF124Q15973 351 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HIST2H2BEQ16778 126 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HIST1H2BHQ93079 126 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HIST1H2BNQ99877 126 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HIST1H2BMQ99879 126 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 NCOR1O75376 2440 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 LYPD2Q6UXB3 125 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 A0A1W2PPI3 338 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 FBLN5Q9UBX5 448 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 TRAV12-2A0A075B6T6 113 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 ATP6V0E1O15342 81 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 CFHR2P36980 270 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 ETDCA0A1B0GVM5 59 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HLA-DRB4P13762 266 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 WFDC1Q9HC57 220 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 HLA-DRB4X5D2U9 266 aa8.24□□□□□ -1.09
CLIP1-202ENST00000358808 IGHV1OR15-1A0A075B7D0 117 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 LYPD1Q8N2G4 141 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 MED12Q93074 2177 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 RNASE2P10153 161 aaKnown RBP8.23□□□□□ -1.09
CLIP1-202ENST00000358808 UBE2E1P51965 193 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 Q6ZQT7 251 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 MYOFQ9NZM1 2061 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 IGHV4-28A0A0C4DH34 117 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 TRACP01848 142 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 ADAMTSL5Q6ZMM2 481 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 RSPO3Q9BXY4 272 aaPredicted RBP8.23□□□□□ -1.09
CLIP1-202ENST00000358808 IGHV1-69DA0A0B4J2H0 117 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 IGHV1-69P01742 117 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 PDCD11Q14690 1871 aaKnown RBP8.23□□□□□ -1.09
CLIP1-202ENST00000358808 KIF26BQ2KJY2 2108 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 IGLV3-32A0A0A0MS00 114 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 UTF1Q5T230 341 aa8.23□□□□□ -1.09
CLIP1-202ENST00000358808 PAQR4Q8N4S7 273 aaPredicted RBP8.23□□□□□ -1.09
CLIP1-202ENST00000358808 WNK2Q9Y3S1 2297 aa8.22□□□□□ -1.09
CLIP1-202ENST00000358808 RPP25LQ8N5L8 163 aaKnown RBP8.22□□□□□ -1.09
CLIP1-202ENST00000358808 CITED1Q99966 193 aa8.22□□□□□ -1.09
CLIP1-202ENST00000358808 SCN8AQ9UQD0 1980 aa8.22□□□□□ -1.09
CLIP1-202ENST00000358808 NDUFB1O75438 58 aa8.22□□□□□ -1.09
CLIP1-202ENST00000358808 XCL1P47992 114 aa8.22□□□□□ -1.09
CLIP1-202ENST00000358808 FLVCR1-AS1Q8TAF5 88 aa8.22□□□□□ -1.09
CLIP1-202ENST00000358808 AGMATQ9BSE5 352 aa8.22□□□□□ -1.09
CLIP1-202ENST00000358808 ANKRD36A6QL64 1941 aa8.22□□□□□ -1.09
CLIP1-202ENST00000358808 IGKV1-9A0A0C4DH69 117 aa8.22□□□□□ -1.09
CLIP1-202ENST00000358808 SEC61GP60059 68 aa8.22□□□□□ -1.09
CLIP1-202ENST00000358808 C1orf43Q9BWL3 253 aa8.21□□□□□ -1.09
CLIP1-202ENST00000358808 IGHV1-24A0A0C4DH33 117 aa8.21□□□□□ -1.09
CLIP1-202ENST00000358808 BUB3O43684 328 aa8.21□□□□□ -1.09
CLIP1-202ENST00000358808 UBE2AP49459 152 aa8.21□□□□□ -1.09
CLIP1-202ENST00000358808 ID3Q02535 119 aa8.21□□□□□ -1.09
CLIP1-202ENST00000358808 Q86TA4 180 aa8.21□□□□□ -1.09
CLIP1-202ENST00000358808 C8orf49Q96NF6 230 aa8.21□□□□□ -1.09
CLIP1-202ENST00000358808 SPTAN1Q13813 2472 aaKnown RBP8.21□□□□□ -1.09
CLIP1-202ENST00000358808 RBM3P98179 157 aaKnown RBP8.21□□□□□ -1.1
CLIP1-202ENST00000358808 LINC00114Q6XXX2 140 aa8.21□□□□□ -1.1
CLIP1-202ENST00000358808 GLRX5Q86SX6 157 aa8.21□□□□□ -1.1
CLIP1-202ENST00000358808 WFDC9Q8NEX5 89 aa8.21□□□□□ -1.1
CLIP1-202ENST00000358808 TRAV13-2A0A0B4J235 113 aa8.21□□□□□ -1.1
CLIP1-202ENST00000358808 SYS1-DBNDD2H3BUS1 97 aa8.21□□□□□ -1.1
CLIP1-202ENST00000358808 C8orf31Q8N9H6 132 aa8.21□□□□□ -1.1
CLIP1-202ENST00000358808 HIST1H2BLQ99880 126 aa8.21□□□□□ -1.1
CLIP1-202ENST00000358808 MPV17L2Q567V2 206 aa8.21□□□□□ -1.1
CLIP1-202ENST00000358808 UBE2CO00762 179 aa8.2□□□□□ -1.1
CLIP1-202ENST00000358808 CCL18P55774 89 aa8.2□□□□□ -1.1
CLIP1-202ENST00000358808 SHANK2-AS3Q9BTD1 123 aa8.2□□□□□ -1.1
CLIP1-202ENST00000358808 HEATR1Q9H583 2144 aaKnown RBP8.2□□□□□ -1.1
CLIP1-202ENST00000358808 LMO1P25800 156 aa8.2□□□□□ -1.1
CLIP1-202ENST00000358808 MESP1Q9BRJ9 268 aa8.2□□□□□ -1.1
CLIP1-202ENST00000358808 FGF16O43320 207 aa8.2□□□□□ -1.1
CLIP1-202ENST00000358808 SLAQ13239 276 aa8.2□□□□□ -1.1
CLIP1-202ENST00000358808 CREBBPQ92793 2442 aa8.2□□□□□ -1.1
CLIP1-202ENST00000358808 RALGAPA1Q6GYQ0 2036 aa8.2□□□□□ -1.1
CLIP1-202ENST00000358808 K7ENP7 123 aa8.2□□□□□ -1.1
CLIP1-202ENST00000358808 C2orf66Q6UXQ4 117 aa8.2□□□□□ -1.1
CLIP1-202ENST00000358808 A0A0A6YYD4 124 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 CDKN1BP46527 198 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 E7EQL1 145 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 HS3ST6Q96QI5 342 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 COLCA2A8K830 154 aa8.19□□□□□ -1.1
CLIP1-202ENST00000358808 CXCL1P09341 107 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms