RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 IGHV3-21A0A0B4J1V1 117 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 A0A1B0GXF2 115 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 TMEM238C9JI98 176 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 TGFAP01135 160 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 EGR2P11161 476 aaPredicted RBP10.06□□□□□ -0.8
CLK3-201ENST00000345005 NDPQ00604 133 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 KLF17Q5JT82 389 aaPredicted RBP10.06□□□□□ -0.8
CLK3-201ENST00000345005 FAM19A2Q8N3H0 131 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 PIFOQ8TCI5 191 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 FMC1Q96HJ9 113 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 GPR82Q96P67 336 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 ZNF355PQ9NSJ1 428 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 THYN1Q9P016 225 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 EPDR1Q9UM22 224 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 MOB4Q9Y3A3 225 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 ITPR2Q14571 2701 aa10.06□□□□□ -0.8
CLK3-201ENST00000345005 K7EIM0 57 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 AVPP01185 164 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 NBEAP1P0C6P0 100 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 C5orf56Q8N8D9 126 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 CST9LQ9H4G1 147 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 APCP25054 2843 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 IGLV11-55A0A075B6I3 123 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 HIGD1CA8MV81 97 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 MYCNOSP40205 109 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 RNASEKQ6P5S7 137 aaKnown RBP10.05□□□□□ -0.8
CLK3-201ENST00000345005 C12orf54Q6X4T0 127 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 FANCD2OSQ96PS1 177 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 NDFIP1Q9BT67 221 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 TMEM191AQ9H0A3 160 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 MS4A6AQ9H2W1 248 aa10.05□□□□□ -0.8
CLK3-201ENST00000345005 VPS13CQ709C8 3753 aa10.04□□□□□ -0.8
CLK3-201ENST00000345005 C2orf70A6NJV1 201 aa10.04□□□□□ -0.8
CLK3-201ENST00000345005 DAZAP1Q96EP5 407 aaKnown RBP10.04□□□□□ -0.8
CLK3-201ENST00000345005 PMCHL2Q9BQD1 86 aa10.04□□□□□ -0.8
CLK3-201ENST00000345005 RPP21Q9H633 154 aaKnown RBP10.04□□□□□ -0.8
CLK3-201ENST00000345005 PRRC2AP48634 2157 aaKnown RBP10.04□□□□□ -0.8
CLK3-201ENST00000345005 CSPG4Q6UVK1 2322 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 IGLC1P0CG04 106 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 IGHV4-31P0DP07 118 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 PLP1P60201 277 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 Q56UQ5 140 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 UNQ5815/PRO19632Q6UWF5 114 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 PATE2Q6UY27 113 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 TMEM219Q86XT9 240 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 C5orf17Q8NAS9 161 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 MAPK1IP1LQ8NDC0 245 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 FAM110DQ8TAY7 271 aaPredicted RBP10.03□□□□□ -0.8
CLK3-201ENST00000345005 FXYD5Q96DB9 178 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 Q96MF0 132 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 TMUB1Q9BVT8 246 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 PRSS22Q9GZN4 317 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 HSPB8Q9UJY1 196 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 RNF24Q9Y225 148 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 A0A1B0GW15 77 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 A6NDX4 124 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 ATP6V0E1O15342 81 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 SLC25A5P05141 298 aaKnown RBP10.03□□□□□ -0.8
CLK3-201ENST00000345005 HINT1P49773 126 aaPredicted RBP10.03□□□□□ -0.8
CLK3-201ENST00000345005 MFAP4P55083 255 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 EBLN2Q6P2I7 272 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 ZNF48Q96MX3 618 aaPredicted RBP10.03□□□□□ -0.8
CLK3-201ENST00000345005 CSMD2Q7Z408 3487 aa10.03□□□□□ -0.8
CLK3-201ENST00000345005 NOTCH2Q04721 2471 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 CBY3A6NI87 242 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 H3BUX3 64 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 P01737 135 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 SCGB1A1P11684 91 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 IGLL1P15814 213 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 ORM2P19652 201 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 BMI1P35226 326 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 KLK9Q2XQG4 91 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 PRR27Q6MZM9 219 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 RBPMS2Q6ZRY4 209 aaKnown RBP10.02□□□□□ -0.81
CLK3-201ENST00000345005 OR4F17Q8NGA8 305 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 MLST8Q9BVC4 326 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 KLK9Q9UKQ9 250 aa10.02□□□□□ -0.81
CLK3-201ENST00000345005 TRAV5A0A0B4J249 113 aa10.01□□□□□ -0.81
CLK3-201ENST00000345005 TRBV6-1A0A0K0K1D8 114 aa10.01□□□□□ -0.81
CLK3-201ENST00000345005 SYS1-DBNDD2H3BUS1 97 aa10.01□□□□□ -0.81
CLK3-201ENST00000345005 LEPROTL1O95214 131 aa10.01□□□□□ -0.81
CLK3-201ENST00000345005 IGKV1-17P01599 117 aa10.01□□□□□ -0.81
CLK3-201ENST00000345005 VAMP3Q15836 100 aa10.01□□□□□ -0.81
CLK3-201ENST00000345005 ECSCRQ19T08 205 aa10.01□□□□□ -0.81
CLK3-201ENST00000345005 RNF151Q2KHN1 245 aa10.01□□□□□ -0.81
CLK3-201ENST00000345005 SLC25A34Q6PIV7 304 aa10.01□□□□□ -0.81
CLK3-201ENST00000345005 LINC00305Q7Z4B0 112 aa10.01□□□□□ -0.81
CLK3-201ENST00000345005 OR1B1Q8NGR6 318 aa10.01□□□□□ -0.81
CLK3-201ENST00000345005 MAP1LC3CQ9BXW4 147 aa10.01□□□□□ -0.81
CLK3-201ENST00000345005 PGPA6NDG6 321 aa10□□□□□ -0.81
CLK3-201ENST00000345005 OR4C46A6NHA9 309 aa10□□□□□ -0.81
CLK3-201ENST00000345005 PRSS47A8MTI9 375 aa10□□□□□ -0.81
CLK3-201ENST00000345005 GNG7O60262 68 aa10□□□□□ -0.81
CLK3-201ENST00000345005 SCGB2A1O75556 95 aa10□□□□□ -0.81
CLK3-201ENST00000345005 CA1P00915 261 aaPredicted RBP10□□□□□ -0.81
CLK3-201ENST00000345005 PSG1P11464 419 aa10□□□□□ -0.81
CLK3-201ENST00000345005 CAMPP49913 170 aa10□□□□□ -0.81
CLK3-201ENST00000345005 CRIP2P52943 208 aaPredicted RBP10□□□□□ -0.81
CLK3-201ENST00000345005 GDF5OSQ5U4N7 250 aa10□□□□□ -0.81
CLK3-201ENST00000345005 KRTAP1-3Q8IUG1 177 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 209.3 ms