RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 TMEM219Q86XT9 240 aa11.6□□□□□ -0.55
VIPAS39-202ENST00000343765 PIP4P2Q8N4L2 257 aa11.6□□□□□ -0.55
VIPAS39-202ENST00000343765 ZANQ9Y493 2812 aa11.6□□□□□ -0.55
VIPAS39-202ENST00000343765 IGHV3OR16-13A0A075B7E8 117 aa11.6□□□□□ -0.55
VIPAS39-202ENST00000343765 IGHV3-74A0A0B4J1X5 117 aa11.6□□□□□ -0.55
VIPAS39-202ENST00000343765 TRBV6-1A0A0K0K1D8 114 aa11.6□□□□□ -0.55
VIPAS39-202ENST00000343765 FAM231BA6NCW3 169 aa11.6□□□□□ -0.55
VIPAS39-202ENST00000343765 RPL7P18124 248 aaKnown RBP11.6□□□□□ -0.55
VIPAS39-202ENST00000343765 PDE6HQ13956 83 aa11.6□□□□□ -0.55
VIPAS39-202ENST00000343765 C16orf54Q6UWD8 224 aa11.6□□□□□ -0.55
VIPAS39-202ENST00000343765 PRORYQ9H606 182 aa11.6□□□□□ -0.55
VIPAS39-202ENST00000343765 HAX1O00165 279 aa11.59□□□□□ -0.55
VIPAS39-202ENST00000343765 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.59□□□□□ -0.55
VIPAS39-202ENST00000343765 OVOL3O00110 214 aa11.59□□□□□ -0.55
VIPAS39-202ENST00000343765 CLEC3BP05452 202 aa11.59□□□□□ -0.55
VIPAS39-202ENST00000343765 SMAD5-AS1Q9Y6J3 95 aa11.59□□□□□ -0.55
VIPAS39-202ENST00000343765 SCGB2A1O75556 95 aa11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 CTRLP40313 264 aa11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 NUTF2P61970 127 aaKnown RBP11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 RELQ04864 619 aaPredicted RBP11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 LINC00173Q6ZV60 143 aa11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 SPATA12Q7Z6I5 190 aa11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.58□□□□□ -0.562e-6■■■■□ 24
VIPAS39-202ENST00000343765 IGHV1-24A0A0C4DH33 117 aa11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 NPFFO15130 113 aa11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 BTF3P20290 206 aaKnown RBP11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 PSG9Q00887 426 aa11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 FAM110DQ8TAY7 271 aaPredicted RBP11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 LINC00527Q9UJ94 153 aa11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 FAM208BQ5VWN6 2430 aa11.58□□□□□ -0.56
VIPAS39-202ENST00000343765 IGHV3-49A0A0A0MS15 119 aa11.57□□□□□ -0.56
VIPAS39-202ENST00000343765 SH2D1AO60880 128 aa11.57□□□□□ -0.56
VIPAS39-202ENST00000343765 RIGQ13278 110 aa11.57□□□□□ -0.56
VIPAS39-202ENST00000343765 CLEC19AQ6UXS0 136 aa11.57□□□□□ -0.56
VIPAS39-202ENST00000343765 VGLL1Q99990 258 aa11.57□□□□□ -0.56
VIPAS39-202ENST00000343765 C2orf70A6NJV1 201 aa11.57□□□□□ -0.56
VIPAS39-202ENST00000343765 IGHV4-39P01824 125 aa11.57□□□□□ -0.56
VIPAS39-202ENST00000343765 ABCA2Q9BZC7 2435 aa11.57□□□□□ -0.56
VIPAS39-202ENST00000343765 ZNF207O43670 478 aaKnown RBP11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 LINC00614P0C842 121 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 SFTPCP11686 197 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 ZNF502Q8TBZ5 544 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 USP9YO00507 2555 aaPredicted RBP11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 CENPVL3A0A0U1RRI6 287 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 SERTM2A0A1B0GWG4 89 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 TMEM189A5PLL7 270 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 H0Y8G0 127 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 BRD3OSQ6XYD6 125 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 TXN2Q99757 166 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 CSPG4Q6UVK1 2322 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 TCAPO15273 167 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 G0S2P27469 103 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 LYZL1Q6UWQ5 148 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 NDFIP1Q9BT67 221 aa11.56□□□□□ -0.56
VIPAS39-202ENST00000343765 TMEM213A2RRL7 107 aa11.55□□□□□ -0.56
VIPAS39-202ENST00000343765 Q6ZN92 141 aa11.55□□□□□ -0.56
VIPAS39-202ENST00000343765 RNF182Q8N6D2 247 aa11.55□□□□□ -0.56
VIPAS39-202ENST00000343765 ERCC8Q13216 396 aa11.55□□□□□ -0.56
VIPAS39-202ENST00000343765 FAM162BQ5T6X4 162 aa11.55□□□□□ -0.56
VIPAS39-202ENST00000343765 CCDC140Q96MF4 163 aa11.55□□□□□ -0.56
VIPAS39-202ENST00000343765 PRR25Q96S07 402 aa11.55□□□□□ -0.56
VIPAS39-202ENST00000343765 TMEM70Q9BUB7 260 aa11.55□□□□□ -0.56
VIPAS39-202ENST00000343765 MCRIP2Q9BUT9 160 aaKnown RBP11.55□□□□□ -0.56
VIPAS39-202ENST00000343765 LEPROTL1O95214 131 aa11.54□□□□□ -0.56
VIPAS39-202ENST00000343765 IGHG4P01861 327 aa11.54□□□□□ -0.56
VIPAS39-202ENST00000343765 IGLC3P0DOY3 106 aa11.54□□□□□ -0.56
VIPAS39-202ENST00000343765 ZNF80P51504 273 aaPredicted RBP11.54□□□□□ -0.56
VIPAS39-202ENST00000343765 CHCHD1Q96BP2 118 aaKnown RBP11.54□□□□□ -0.56
VIPAS39-202ENST00000343765 ZFAND3Q9H8U3 227 aa11.54□□□□□ -0.56
VIPAS39-202ENST00000343765 UQCR10Q9UDW1 63 aa11.54□□□□□ -0.56
VIPAS39-202ENST00000343765 PRAC2D3DTV9 90 aa11.53□□□□□ -0.56
VIPAS39-202ENST00000343765 LRRK2Q5S007 2527 aa11.53□□□□□ -0.56
VIPAS39-202ENST00000343765 TRAV40A0A0B4J280 105 aa11.53□□□□□ -0.56
VIPAS39-202ENST00000343765 C5orf56Q8N8D9 126 aa11.53□□□□□ -0.56
VIPAS39-202ENST00000343765 TMEM190Q8WZ59 177 aa11.53□□□□□ -0.56
VIPAS39-202ENST00000343765 HNRNPA3P51991 378 aaKnown RBP11.52□□□□□ -0.56
VIPAS39-202ENST00000343765 CUBNO60494 3623 aa11.52□□□□□ -0.56
VIPAS39-202ENST00000343765 IGHV4-61A0A0C4DH41 118 aa11.52□□□□□ -0.57
VIPAS39-202ENST00000343765 LOC389332A0A1B0GUA5 103 aa11.52□□□□□ -0.57
VIPAS39-202ENST00000343765 GOSR1O95249 250 aa11.52□□□□□ -0.57
VIPAS39-202ENST00000343765 SAPCD1Q5SSQ6 148 aa11.52□□□□□ -0.57
VIPAS39-202ENST00000343765 AMN1Q8IY45 258 aa11.52□□□□□ -0.57
VIPAS39-202ENST00000343765 TRAV9-2A0A087WT02 112 aa11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 M0QZK8 103 aa11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 BUB3O43684 328 aa11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 RPLP1P05386 114 aaKnown RBP11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 Q6AWC8 147 aa11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 CLPSL1A2RUU4 121 aa11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 OR4C46A6NHA9 309 aa11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 IGLL1P15814 213 aa11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 TFPI2P48307 235 aa11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 KLHDC1Q8N7A1 406 aa11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 EEF1AKMT3Q96AZ1 226 aa11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 TP73-AS1Q9UF72 201 aa11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 ZNF462Q96JM2 2506 aa11.51□□□□□ -0.57
VIPAS39-202ENST00000343765 D6R8Y8 96 aa11.5□□□□□ -0.57
VIPAS39-202ENST00000343765 SYS1-DBNDD2H3BUS1 97 aa11.5□□□□□ -0.57
VIPAS39-202ENST00000343765 ORM1P02763 201 aa11.5□□□□□ -0.57
VIPAS39-202ENST00000343765 LY6EQ16553 131 aa11.5□□□□□ -0.57
VIPAS39-202ENST00000343765 PRSS3P2Q8NHM4 247 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms