RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 S100A7AQ86SG5 101 aa11.68□□□□□ -0.54
TPM3-208ENST00000341485 URB1-AS1Q96HZ7 61 aa11.68□□□□□ -0.54
TPM3-208ENST00000341485 SNHG12Q9BXW3 62 aa11.68□□□□□ -0.54
TPM3-208ENST00000341485 K7EQM0 130 aa11.67□□□□□ -0.54
TPM3-208ENST00000341485 AVPP01185 164 aa11.67□□□□□ -0.54
TPM3-208ENST00000341485 IGHV4-31P0DP07 118 aa11.67□□□□□ -0.54
TPM3-208ENST00000341485 PDE6HQ13956 83 aa11.67□□□□□ -0.54
TPM3-208ENST00000341485 ANKRD17O75179 2603 aaKnown RBP11.67□□□□□ -0.54
TPM3-208ENST00000341485 HSBP1O75506 76 aa11.67□□□□□ -0.54
TPM3-208ENST00000341485 CTSGP08311 255 aa11.67□□□□□ -0.54
TPM3-208ENST00000341485 CRIP1P50238 77 aa11.67□□□□□ -0.54
TPM3-208ENST00000341485 RNASEKQ6P5S7 137 aaKnown RBP11.67□□□□□ -0.54
TPM3-208ENST00000341485 MEGF9Q9H1U4 602 aa11.67□□□□□ -0.54
TPM3-208ENST00000341485 HAX1O00165 279 aa11.66□□□□□ -0.54
TPM3-208ENST00000341485 FOXA3P55318 350 aaPredicted RBP11.66□□□□□ -0.54
TPM3-208ENST00000341485 KRTAP1-3Q8IUG1 177 aa11.66□□□□□ -0.54
TPM3-208ENST00000341485 MIEN1Q9BRT3 115 aa11.66□□□□□ -0.54
TPM3-208ENST00000341485 ZNF705AQ6ZN79 300 aaPredicted RBP11.66□□□□□ -0.54
TPM3-208ENST00000341485 BORCS7Q96B45 105 aa11.66□□□□□ -0.54
TPM3-208ENST00000341485 C8orf49Q96NF6 230 aa11.66□□□□□ -0.54
TPM3-208ENST00000341485 AAMDCQ9H7C9 122 aa11.66□□□□□ -0.54
TPM3-208ENST00000341485 CSMD1Q96PZ7 3565 aa11.65□□□□□ -0.54
TPM3-208ENST00000341485 SH2D7A6NKC9 451 aaPredicted RBP11.65□□□□□ -0.54
TPM3-208ENST00000341485 M0R2Z0 102 aa11.65□□□□□ -0.54
TPM3-208ENST00000341485 RAB4AP20338 218 aa11.65□□□□□ -0.54
TPM3-208ENST00000341485 FAM110DQ8TAY7 271 aaPredicted RBP11.65□□□□□ -0.54
TPM3-208ENST00000341485 TXN2Q99757 166 aa11.65□□□□□ -0.54
TPM3-208ENST00000341485 FAM181BA6NEQ2 426 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 CHEK1O14757 476 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 CTRLP40313 264 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 ECSCRQ19T08 205 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 UNQ5815/PRO19632Q6UWF5 114 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 SMAD5-AS1Q9Y6J3 95 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 LOC102724200A0A096LPH7 203 aaPredicted RBP11.64□□□□□ -0.55
TPM3-208ENST00000341485 M0QZ24 198 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 M0R143 59 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 ATP6V0E1O15342 81 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 RPL7P18124 248 aaKnown RBP11.64□□□□□ -0.55
TPM3-208ENST00000341485 CYB5R2Q6BCY4 276 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 EBLN2Q6P2I7 272 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 TMEM219Q86XT9 240 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 TMUB1Q9BVT8 246 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 RABAC1Q9UI14 185 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 CR1P17927 2039 aa11.64□□□□□ -0.55
TPM3-208ENST00000341485 SCGB2A1O75556 95 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 ARMS2P0C7Q2 107 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 CSN1S1P47710 185 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 PSG9Q00887 426 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 ZNF502Q8TBZ5 544 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 MOB4Q9Y3A3 225 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 TENM4Q6N022 2769 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 IGHV3OR16-8A0A075B7F1 116 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 IGKV2-40A0A087WW87 121 aaPredicted RBP11.63□□□□□ -0.55
TPM3-208ENST00000341485 IGHV3-35A0A0C4DH35 117 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 A0A1B0GUT8 65 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 IGKV2D-40P01614 121 aaPredicted RBP11.63□□□□□ -0.55
TPM3-208ENST00000341485 KLK9Q2XQG4 91 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 C15orf32Q32M92 178 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 SPATA45Q537H7 98 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 LCN12Q6JVE5 192 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 WFDC11Q8NEX6 87 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 NDFIP1Q9BT67 221 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 KLK9Q9UKQ9 250 aa11.63□□□□□ -0.55
TPM3-208ENST00000341485 SERTM2A0A1B0GWG4 89 aa11.62□□□□□ -0.55
TPM3-208ENST00000341485 H3BUX3 64 aa11.62□□□□□ -0.55
TPM3-208ENST00000341485 GPR183P32249 361 aa11.62□□□□□ -0.55
TPM3-208ENST00000341485 LY6EQ16553 131 aa11.62□□□□□ -0.55
TPM3-208ENST00000341485 FAM162BQ5T6X4 162 aa11.62□□□□□ -0.55
TPM3-208ENST00000341485 PIFOQ8TCI5 191 aa11.62□□□□□ -0.55
TPM3-208ENST00000341485 PTPN13Q12923 2485 aa11.62□□□□□ -0.55
TPM3-208ENST00000341485 C2orf70A6NJV1 201 aa11.61□□□□□ -0.55
TPM3-208ENST00000341485 LINC01548A6NM66 108 aa11.61□□□□□ -0.55
TPM3-208ENST00000341485 RHOGP84095 191 aa11.61□□□□□ -0.55
TPM3-208ENST00000341485 RIGQ13278 110 aa11.61□□□□□ -0.55
TPM3-208ENST00000341485 PMCHL1Q16048 86 aa11.61□□□□□ -0.55
TPM3-208ENST00000341485 C5orf56Q8N8D9 126 aa11.61□□□□□ -0.55
TPM3-208ENST00000341485 ASH1LQ9NR48 2969 aaKnown RBP11.61□□□□□ -0.55
TPM3-208ENST00000341485 G3V318 75 aa11.61□□□□□ -0.55
TPM3-208ENST00000341485 IGHG4P01861 327 aa11.61□□□□□ -0.55
TPM3-208ENST00000341485 CT45A10P0DMU9 189 aa11.61□□□□□ -0.55
TPM3-208ENST00000341485 NUTF2P61970 127 aaKnown RBP11.61□□□□□ -0.55
TPM3-208ENST00000341485 IGFL4Q6B9Z1 124 aa11.61□□□□□ -0.55
TPM3-208ENST00000341485 GATD1Q8NB37 220 aa11.61□□□□□ -0.55
TPM3-208ENST00000341485 CLEC5AQ9NY25 188 aa11.61□□□□□ -0.55
TPM3-208ENST00000341485 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.6□□□□□ -0.558e-7■■■■□ 20.9
TPM3-208ENST00000341485 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.6□□□□□ -0.55
TPM3-208ENST00000341485 SH2D1AO60880 128 aa11.6□□□□□ -0.55
TPM3-208ENST00000341485 HLA-DMBP28068 263 aa11.6□□□□□ -0.55
TPM3-208ENST00000341485 ATOH7Q8N100 152 aa11.6□□□□□ -0.55
TPM3-208ENST00000341485 ARL6IP6Q8N6S5 226 aa11.6□□□□□ -0.55
TPM3-208ENST00000341485 CHCHD1Q96BP2 118 aaKnown RBP11.6□□□□□ -0.55
TPM3-208ENST00000341485 ZFAND3Q9H8U3 227 aa11.6□□□□□ -0.55
TPM3-208ENST00000341485 CELSR2Q9HCU4 2923 aa11.6□□□□□ -0.55
TPM3-208ENST00000341485 VPS13CQ709C8 3753 aa11.6□□□□□ -0.55
TPM3-208ENST00000341485 SMAD7O15105 426 aaKnown RBP11.59□□□□□ -0.55
TPM3-208ENST00000341485 POLQO75417 2590 aa11.59□□□□□ -0.55
TPM3-208ENST00000341485 CLEC3BP05452 202 aa11.59□□□□□ -0.55
TPM3-208ENST00000341485 BTF3P20290 206 aaKnown RBP11.59□□□□□ -0.55
TPM3-208ENST00000341485 COX8CQ7Z4L0 72 aa11.59□□□□□ -0.55
TPM3-208ENST00000341485 SPATA12Q7Z6I5 190 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms