RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 DPH3P1Q9H4G8 78 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 DYSFO75923 2080 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 A0A087WWC5 75 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 PAX9P55771 341 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 CEP250Q9BV73 2442 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 RHODO00212 210 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 GPHB5Q86YW7 130 aa7.95□□□□□ -1.14
USP54-201ENST00000339859 LINC01549A6NIU2 74 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 DEFA6Q01524 100 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 IGHV3-73A0A0B4J1V6 119 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 AZU1P20160 251 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 SRSF9Q13242 221 aaKnown RBP eCLIP7.94□□□□□ -1.14
USP54-201ENST00000339859 MEIG1Q5JSS6 88 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 LYRM7Q5U5X0 104 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 MDKP21741 143 aaPredicted RBP7.94□□□□□ -1.14
USP54-201ENST00000339859 OCC1Q8TAD7 63 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 RIPPLY3P57055 190 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 HILS1P60008 231 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 KRTAP10-9P60411 292 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 SRSF1Q07955 248 aaKnown RBP eCLIP7.94□□□□□ -1.14
USP54-201ENST00000339859 IMMP2LQ96T52 175 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 ICE1Q9Y2F5 2266 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 SMAD5-AS1Q9Y6J3 95 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 ARHGAP21Q5T5U3 1957 aa7.94□□□□□ -1.14
USP54-201ENST00000339859 SNRPEP62304 92 aaKnown RBP7.93□□□□□ -1.14
USP54-201ENST00000339859 TCF23Q7RTU1 214 aa7.93□□□□□ -1.14
USP54-201ENST00000339859 C2orf70A6NJV1 201 aa7.93□□□□□ -1.14
USP54-201ENST00000339859 EREGO14944 169 aa7.93□□□□□ -1.14
USP54-201ENST00000339859 CARHSP1Q9Y2V2 147 aaKnown RBP7.93□□□□□ -1.14
USP54-201ENST00000339859 EML6Q6ZMW3 1958 aa7.93□□□□□ -1.14
USP54-201ENST00000339859 APOHP02749 345 aaPredicted RBP7.93□□□□□ -1.14
USP54-201ENST00000339859 PFN1P07737 140 aaKnown RBP7.93□□□□□ -1.14
USP54-201ENST00000339859 PRB4P10163 310 aaPredicted RBP7.93□□□□□ -1.14
USP54-201ENST00000339859 ORMDL2Q53FV1 153 aa7.93□□□□□ -1.14
USP54-201ENST00000339859 IL17DQ8TAD2 202 aa7.93□□□□□ -1.14
USP54-201ENST00000339859 WIPF2Q8TF74 440 aaPredicted RBP7.93□□□□□ -1.14
USP54-201ENST00000339859 SPXQ9BT56 116 aa7.93□□□□□ -1.14
USP54-201ENST00000339859 KLK9Q9UKQ9 250 aa7.93□□□□□ -1.14
USP54-201ENST00000339859 TRAV9-2A0A087WT02 112 aa7.93□□□□□ -1.14
USP54-201ENST00000339859 TEX22C9J3V5 150 aa7.93□□□□□ -1.14
USP54-201ENST00000339859 SLAQ13239 276 aa7.93□□□□□ -1.14
USP54-201ENST00000339859 RNF152Q8N8N0 203 aa7.93□□□□□ -1.14
USP54-201ENST00000339859 INS-IGF2F8WCM5 200 aa7.92□□□□□ -1.14
USP54-201ENST00000339859 IGHG4P01861 327 aa7.92□□□□□ -1.14
USP54-201ENST00000339859 K7EIM0 57 aa7.92□□□□□ -1.14
USP54-201ENST00000339859 A8MWV9 139 aa7.92□□□□□ -1.14
USP54-201ENST00000339859 TRGC2P03986 189 aa7.92□□□□□ -1.14
USP54-201ENST00000339859 CDX1P47902 265 aaPredicted RBP7.92□□□□□ -1.14
USP54-201ENST00000339859 KIAA1644Q3SXP7 199 aa7.92□□□□□ -1.14
USP54-201ENST00000339859 NXT2Q9NPJ8 142 aaKnown RBP7.92□□□□□ -1.14
USP54-201ENST00000339859 NIT2Q9NQR4 276 aa7.92□□□□□ -1.14
USP54-201ENST00000339859 POLR3KQ9Y2Y1 108 aaPredicted RBP7.92□□□□□ -1.14
USP54-201ENST00000339859 ZNF295-AS1Q8N0V1 137 aa7.92□□□□□ -1.14
USP54-201ENST00000339859 USF3Q68DE3 2245 aa7.92□□□□□ -1.14
USP54-201ENST00000339859 SSBP2P81877 361 aaPredicted RBP7.92□□□□□ -1.14
USP54-201ENST00000339859 LYZL1Q6UWQ5 148 aa7.92□□□□□ -1.14
USP54-201ENST00000339859 IGF1P05019 195 aa7.91□□□□□ -1.14
USP54-201ENST00000339859 VCX2Q9H322 139 aa7.91□□□□□ -1.14
USP54-201ENST00000339859 TMEM160Q9NX00 188 aa7.91□□□□□ -1.14
USP54-201ENST00000339859 RBAKDNA6NC62 111 aa7.91□□□□□ -1.14
USP54-201ENST00000339859 RPL13AP40429 203 aaKnown RBP7.91□□□□□ -1.14
USP54-201ENST00000339859 C16orf54Q6UWD8 224 aa7.91□□□□□ -1.14
USP54-201ENST00000339859 Q6ZSV7 163 aa7.91□□□□□ -1.14
USP54-201ENST00000339859 HAPLN4Q86UW8 402 aa7.91□□□□□ -1.14
USP54-201ENST00000339859 CYSLTR1Q9Y271 337 aa7.91□□□□□ -1.14
USP54-201ENST00000339859 IFITM10A6NMD0 228 aa7.91□□□□□ -1.14
USP54-201ENST00000339859 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.91□□□□□ -1.14
USP54-201ENST00000339859 CRLF1O75462 422 aa7.91□□□□□ -1.14
USP54-201ENST00000339859 VWC2LB2RUY7 222 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 CGB3P0DN86 165 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 CGB7P0DN87 165 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 FOXA3P55318 350 aaPredicted RBP7.9□□□□□ -1.14
USP54-201ENST00000339859 FNDC4Q9H6D8 234 aaPredicted RBP7.9□□□□□ -1.14
USP54-201ENST00000339859 GAGE12BA1L429 117 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 GAGE7O76087 117 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 GAGE12FP0CL80 117 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 GAGE12GP0CL81 117 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 GAGE12IP0CL82 117 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 NMUP48645 174 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 CFHR3Q02985 330 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 CFHR4Q92496 578 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 RMI2Q96E14 147 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 GFRA4Q9GZZ7 299 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 ZNF492Q9P255 531 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 MRPS16Q9Y3D3 137 aaKnown RBP7.9□□□□□ -1.14
USP54-201ENST00000339859 LY6LH3BQJ8 138 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 PSMB2P49721 201 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 CD300EQ496F6 205 aaPredicted RBP7.9□□□□□ -1.14
USP54-201ENST00000339859 DYNAPQ8N1N2 210 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 C16orf74Q96GX8 76 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 ZNF414Q96IQ9 312 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 CSTL1Q9H114 145 aa7.9□□□□□ -1.14
USP54-201ENST00000339859 TRAV12-2A0A075B6T6 113 aa7.9□□□□□ -1.15
USP54-201ENST00000339859 PHOX2AO14813 284 aa7.9□□□□□ -1.15
USP54-201ENST00000339859 CTSGP08311 255 aa7.9□□□□□ -1.15
USP54-201ENST00000339859 RASL11AQ6T310 242 aa7.9□□□□□ -1.15
USP54-201ENST00000339859 C8orf49Q96NF6 230 aa7.9□□□□□ -1.15
USP54-201ENST00000339859 PTPRBP23467 1997 aa7.9□□□□□ -1.15
USP54-201ENST00000339859 ZNF318Q5VUA4 2279 aa7.9□□□□□ -1.15
USP54-201ENST00000339859 ZNF876PQ49A33 203 aa7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms