RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 BLOC1S1P78537 153 aa16.38■□□□□ 0.21
SDC3-202ENST00000339394 DEFB121Q5J5C9 76 aa16.38■□□□□ 0.21
SDC3-202ENST00000339394 FOXI2Q6ZQN5 318 aa16.38■□□□□ 0.21
SDC3-202ENST00000339394 MRPL53Q96EL3 112 aaKnown RBP16.38■□□□□ 0.21
SDC3-202ENST00000339394 SAV1Q9H4B6 383 aaPredicted RBP16.38■□□□□ 0.21
SDC3-202ENST00000339394 OTORQ9NRC9 128 aa16.38■□□□□ 0.21
SDC3-202ENST00000339394 PRELID1Q9Y255 219 aa16.38■□□□□ 0.21
SDC3-202ENST00000339394 A0A1W2PRE2 83 aa16.38■□□□□ 0.21
SDC3-202ENST00000339394 A8MZ25 164 aa16.38■□□□□ 0.21
SDC3-202ENST00000339394 PRAC2D3DTV9 90 aa16.38■□□□□ 0.21
SDC3-202ENST00000339394 HBE1P02100 147 aa16.38■□□□□ 0.21
SDC3-202ENST00000339394 UBE2G2P60604 165 aa16.38■□□□□ 0.21
SDC3-202ENST00000339394 A0A0J9YX75 114 aa16.37■□□□□ 0.21
SDC3-202ENST00000339394 EBLN2Q6P2I7 272 aa16.37■□□□□ 0.21
SDC3-202ENST00000339394 STHQ8IWL8 128 aa16.37■□□□□ 0.21
SDC3-202ENST00000339394 YTHDF2Q9Y5A9 579 aaKnown RBP16.37■□□□□ 0.21
SDC3-202ENST00000339394 FAM74A7A6NL05 159 aa16.36■□□□□ 0.21
SDC3-202ENST00000339394 H3BMM0 161 aa16.36■□□□□ 0.21
SDC3-202ENST00000339394 ZNF705DP0CH99 300 aaPredicted RBP16.36■□□□□ 0.21
SDC3-202ENST00000339394 ZNF705BP0CI00 300 aaPredicted RBP16.36■□□□□ 0.21
SDC3-202ENST00000339394 HLA-DRB4P13762 266 aa16.36■□□□□ 0.21
SDC3-202ENST00000339394 MRAPQ8TCY5 172 aa16.36■□□□□ 0.21
SDC3-202ENST00000339394 HLA-DRB4X5D2U9 266 aa16.36■□□□□ 0.21
SDC3-202ENST00000339394 RBMY1BA6NDE4 496 aaKnown RBP16.35■□□□□ 0.21
SDC3-202ENST00000339394 RBMY1EA6NEQ0 496 aaKnown RBP16.35■□□□□ 0.21
SDC3-202ENST00000339394 GGTLC3B5MD39 225 aa16.35■□□□□ 0.21
SDC3-202ENST00000339394 RBMY1DP0C7P1 496 aaKnown RBP16.35■□□□□ 0.21
SDC3-202ENST00000339394 SUMO1P63165 101 aaKnown RBP16.35■□□□□ 0.21
SDC3-202ENST00000339394 OR8A1Q8NGG7 326 aa16.35■□□□□ 0.21
SDC3-202ENST00000339394 FRMD6-AS1P0C7T7 363 aa16.34■□□□□ 0.21
SDC3-202ENST00000339394 LYPD6BQ8NI32 183 aa16.34■□□□□ 0.21
SDC3-202ENST00000339394 FBN3Q75N90 2809 aa16.34■□□□□ 0.21
SDC3-202ENST00000339394 RPL35AP18077 110 aaKnown RBP16.34■□□□□ 0.21
SDC3-202ENST00000339394 CSN1S1P47710 185 aa16.34■□□□□ 0.21
SDC3-202ENST00000339394 IFITM2Q01629 132 aa16.34■□□□□ 0.21
SDC3-202ENST00000339394 LINC00322Q6ZN03 302 aaPredicted RBP16.34■□□□□ 0.21
SDC3-202ENST00000339394 TRPT1Q86TN4 253 aaKnown RBP16.34■□□□□ 0.21
SDC3-202ENST00000339394 CMTM2Q8TAZ6 248 aa16.34■□□□□ 0.21
SDC3-202ENST00000339394 RXFP4Q8TDU9 374 aa16.34■□□□□ 0.21
SDC3-202ENST00000339394 NKX6-2Q9C056 277 aaPredicted RBP16.34■□□□□ 0.21
SDC3-202ENST00000339394 LOC102724200A0A096LPH7 203 aaPredicted RBP16.33■□□□□ 0.2
SDC3-202ENST00000339394 PAGE4O60829 102 aa16.33■□□□□ 0.2
SDC3-202ENST00000339394 PPT1P50897 306 aa16.33■□□□□ 0.2
SDC3-202ENST00000339394 CNN1P51911 297 aaKnown RBP16.33■□□□□ 0.2
SDC3-202ENST00000339394 HIST1H1AQ02539 215 aaPredicted RBP16.33■□□□□ 0.2
SDC3-202ENST00000339394 OR4B1Q8NGF8 309 aa16.33■□□□□ 0.2
SDC3-202ENST00000339394 PCNPQ8WW12 178 aaKnown RBP16.33■□□□□ 0.2
SDC3-202ENST00000339394 GNG13Q9P2W3 67 aa16.33■□□□□ 0.2
SDC3-202ENST00000339394 ARL2-SNX15V9GYD0 113 aa16.33■□□□□ 0.2
SDC3-202ENST00000339394 IGKV3-20P01619 116 aa16.32■□□□□ 0.2
SDC3-202ENST00000339394 SLC25A5P05141 298 aaKnown RBP16.32■□□□□ 0.2
SDC3-202ENST00000339394 CST9LP1Q5W188 147 aa16.32■□□□□ 0.2
SDC3-202ENST00000339394 DIRC3C9JPN6 131 aa16.31■□□□□ 0.2
SDC3-202ENST00000339394 C5orf17Q8NAS9 161 aa16.31■□□□□ 0.2
SDC3-202ENST00000339394 OR10J6PQ8NGY7 276 aa16.31■□□□□ 0.2
SDC3-202ENST00000339394 IGKV2-40A0A087WW87 121 aaPredicted RBP16.3■□□□□ 0.2
SDC3-202ENST00000339394 DUSP14O95147 198 aaKnown RBP16.3■□□□□ 0.2
SDC3-202ENST00000339394 IGKV2D-40P01614 121 aaPredicted RBP16.3■□□□□ 0.2
SDC3-202ENST00000339394 GNG5P63218 68 aa16.3■□□□□ 0.2
SDC3-202ENST00000339394 PMS2P11Q13670 270 aa16.3■□□□□ 0.2
SDC3-202ENST00000339394 CCDC28AQ8IWP9 274 aa16.3■□□□□ 0.2
SDC3-202ENST00000339394 ARL6IP6Q8N6S5 226 aa16.3■□□□□ 0.2
SDC3-202ENST00000339394 MANBALQ9NQG1 85 aa16.3■□□□□ 0.2
SDC3-202ENST00000339394 RPH3ALQ9UNE2 315 aa16.3■□□□□ 0.2
SDC3-202ENST00000339394 NMBP08949 121 aa16.3■□□□□ 0.2
SDC3-202ENST00000339394 ATP5G3P48201 142 aa16.3■□□□□ 0.2
SDC3-202ENST00000339394 EPDR1Q9UM22 224 aa16.3■□□□□ 0.2
SDC3-202ENST00000339394 PRKDCP78527 4128 aaKnown RBP16.29■□□□□ 0.2
SDC3-202ENST00000339394 A8MTW9 85 aa16.29■□□□□ 0.2
SDC3-202ENST00000339394 ERCC8Q13216 396 aa16.29■□□□□ 0.2
SDC3-202ENST00000339394 CLUHP3Q96NS8 147 aa16.29■□□□□ 0.2
SDC3-202ENST00000339394 VGLL1Q99990 258 aa16.29■□□□□ 0.2
SDC3-202ENST00000339394 NPIPB6E9PJ23 425 aa16.28■□□□□ 0.2
SDC3-202ENST00000339394 TCRAP04437 139 aa16.28■□□□□ 0.2
SDC3-202ENST00000339394 GOLT1AQ6ZVE7 132 aa16.28■□□□□ 0.2
SDC3-202ENST00000339394 ZNF767PQ75MW2 155 aa16.28■□□□□ 0.2
SDC3-202ENST00000339394 AGPAT4-IT1Q9H0P7 198 aa16.28■□□□□ 0.2
SDC3-202ENST00000339394 C11orf94C9JXX5 98 aa16.27■□□□□ 0.2
SDC3-202ENST00000339394 AMTNQ6UX39 209 aa16.27■□□□□ 0.2
SDC3-202ENST00000339394 C9orf47Q6ZRZ4 202 aa16.27■□□□□ 0.2
SDC3-202ENST00000339394 CSTL1Q9H114 145 aa16.27■□□□□ 0.2
SDC3-202ENST00000339394 AGRNO00468 2067 aa16.27■□□□□ 0.19
SDC3-202ENST00000339394 KIR2DL5BA0A0G2JN68 375 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 KIR2DL5BA0A0G2JPC4 375 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 RBAKDNA6NC62 111 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 IFNA1P01562 189 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 APOC4P55056 127 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 HAGHQ16775 308 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 KIR2DL5AQ8N109 375 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 KIR2DL5BQ8NHK3 375 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 SLC35B3Q9H1N7 401 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 CT45A10P0DMU9 189 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 BCL2P10415 239 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 NUTF2P61970 127 aaKnown RBP16.26■□□□□ 0.19
SDC3-202ENST00000339394 LINC00477Q96M19 166 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 ATG101Q9BSB4 218 aa16.26■□□□□ 0.19
SDC3-202ENST00000339394 GIG44P09565 113 aaPredicted RBP16.25■□□□□ 0.19
SDC3-202ENST00000339394 TMEM78Q5T7P6 136 aa16.25■□□□□ 0.19
SDC3-202ENST00000339394 SBSPONQ8IVN8 264 aa16.25■□□□□ 0.19
SDC3-202ENST00000339394 HIST1H2BAQ96A08 127 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms