RNA–Protein interactions for RNA: ENST00000293880.9

SSRP1-202, Transcript of structure specific recognition protein 1, humanhuman

TSL 2

Gene SSRP1, Length 6,296 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1-202ENST00000293880 LTBP1Q14766 1721 aa13.04□□□□□ -0.32
SSRP1-202ENST00000293880 IGLV3-32A0A0A0MS00 114 aa13.04□□□□□ -0.32
SSRP1-202ENST00000293880 TRAV1-1A0A0B4J248 108 aa13.04□□□□□ -0.32
SSRP1-202ENST00000293880 IGHG3P01860 377 aa13.04□□□□□ -0.32
SSRP1-202ENST00000293880 CEACAM8P31997 349 aaPredicted RBP13.04□□□□□ -0.32
SSRP1-202ENST00000293880 CARD19Q96LW7 228 aa13.04□□□□□ -0.32
SSRP1-202ENST00000293880 SIGLEC9Q9Y336 463 aa13.04□□□□□ -0.32
SSRP1-202ENST00000293880 SRRM5B3KS81 715 aa13.04□□□□□ -0.32
SSRP1-202ENST00000293880 NXPH4O95158 308 aa13.04□□□□□ -0.32
SSRP1-202ENST00000293880 CSRP1P21291 193 aaKnown RBP13.04□□□□□ -0.32
SSRP1-202ENST00000293880 F8W1H4 67 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 ARHGEF17Q96PE2 2063 aaPredicted RBP13.03□□□□□ -0.32
SSRP1-202ENST00000293880 IGLV3-12A0A075B6K2 115 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 SPINK13Q1W4C9 94 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 ANKRD29Q8N6D5 301 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 GREB1Q4ZG55 1949 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 GVINP1Q7Z2Y8 2422 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 IGHV2-70P01814 119 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 RNASE2P10153 161 aaKnown RBP13.03□□□□□ -0.32
SSRP1-202ENST00000293880 DAD1P61803 113 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 C5orf64Q2M2E5 130 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 BRK1Q8WUW1 75 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 MRPL27Q9P0M9 148 aaKnown RBP13.03□□□□□ -0.32
SSRP1-202ENST00000293880 XCL2Q9UBD3 114 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 A0A1W2PPM0 123 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 CCL25O15444 150 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 QRFPP83859 136 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 OVOL3O00110 214 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 BAALCQ8WXS3 180 aa13.03□□□□□ -0.32
SSRP1-202ENST00000293880 OVOL2Q9BRP0 275 aa13.02□□□□□ -0.32
SSRP1-202ENST00000293880 LIME1Q9H400 295 aa13.02□□□□□ -0.32
SSRP1-202ENST00000293880 EP300Q09472 2414 aaPredicted RBP13.02□□□□□ -0.33
SSRP1-202ENST00000293880 A0A1W2PPI3 338 aa13.02□□□□□ -0.33
SSRP1-202ENST00000293880 DEFB131AP59861 70 aa13.02□□□□□ -0.33
SSRP1-202ENST00000293880 IGHV1-24A0A0C4DH33 117 aa13.02□□□□□ -0.33
SSRP1-202ENST00000293880 KLF2Q9Y5W3 355 aaPredicted RBP13.01□□□□□ -0.33
SSRP1-202ENST00000293880 C9orf139Q6ZV77 190 aa13.01□□□□□ -0.33
SSRP1-202ENST00000293880 CRLF1O75462 422 aa13.01□□□□□ -0.33
SSRP1-202ENST00000293880 IGHG4P01861 327 aa13.01□□□□□ -0.33
SSRP1-202ENST00000293880 DOCK9Q9BZ29 2069 aa13.01□□□□□ -0.33
SSRP1-202ENST00000293880 MST1LQ2TV78 715 aa13.01□□□□□ -0.33
SSRP1-202ENST00000293880 BVES-AS1Q5T3Y7 98 aa13.01□□□□□ -0.33
SSRP1-202ENST00000293880 LY6G5BQ8NDX9 201 aa13.01□□□□□ -0.33
SSRP1-202ENST00000293880 DUX4L9Q6RFH8 374 aaPredicted RBP13□□□□□ -0.33
SSRP1-202ENST00000293880 CD59P13987 128 aa13□□□□□ -0.33
SSRP1-202ENST00000293880 Q6ZWC4 215 aa13□□□□□ -0.33
SSRP1-202ENST00000293880 CDPF1Q6NVV7 123 aa13□□□□□ -0.33
SSRP1-202ENST00000293880 WFDC9Q8NEX5 89 aa13□□□□□ -0.33
SSRP1-202ENST00000293880 NTN5Q8WTR8 489 aaPredicted RBP13□□□□□ -0.33
SSRP1-202ENST00000293880 NDUFC2O95298 119 aa13□□□□□ -0.33
SSRP1-202ENST00000293880 IGLC2P0DOY2 106 aa13□□□□□ -0.33
SSRP1-202ENST00000293880 IGLC3P0DOY3 106 aa13□□□□□ -0.33
SSRP1-202ENST00000293880 FAM223BA6NKX1 122 aa13□□□□□ -0.33
SSRP1-202ENST00000293880 TRPT1Q86TN4 253 aaKnown RBP13□□□□□ -0.33
SSRP1-202ENST00000293880 FAM223AQ8IWN6 122 aa13□□□□□ -0.33
SSRP1-202ENST00000293880 SCN5AQ14524 2016 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 NBL1P41271 181 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 FAM186AA6NE01 2351 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 SAA4P35542 130 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 SH2D6Q7Z4S9 175 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 TMEM75Q8N9X5 138 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 TMEM243Q9BU79 118 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 HLA-DRB4P13762 266 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 EFNA4P52798 201 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 C18orf32Q8TCD1 76 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 HLA-DRB4X5D2U9 266 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 K7EMI3 77 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 IGLV3-19P01714 112 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 IGLL1P15814 213 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 PAX9P55771 341 aa12.99□□□□□ -0.33
SSRP1-202ENST00000293880 INAFM2P0DMQ5 153 aa12.98□□□□□ -0.33
SSRP1-202ENST00000293880 ZFP36L1Q07352 338 aaKnown RBP12.98□□□□□ -0.33
SSRP1-202ENST00000293880 SHANK2-AS3Q9BTD1 123 aa12.98□□□□□ -0.33
SSRP1-202ENST00000293880 ATP6V0E1O15342 81 aa12.98□□□□□ -0.33
SSRP1-202ENST00000293880 ZC2HC1AQ96GY0 325 aa12.98□□□□□ -0.33
SSRP1-202ENST00000293880 MRPL51Q4U2R6 128 aaKnown RBP12.98□□□□□ -0.33
SSRP1-202ENST00000293880 TEX36Q5VZQ5 186 aa12.98□□□□□ -0.33
SSRP1-202ENST00000293880 MMP23AO75900 390 aa12.97□□□□□ -0.33
SSRP1-202ENST00000293880 CEND1Q8N111 149 aa12.97□□□□□ -0.33
SSRP1-202ENST00000293880 DSCR8Q96T75 97 aa12.97□□□□□ -0.33
SSRP1-202ENST00000293880 LCTP09848 1927 aa12.97□□□□□ -0.33
SSRP1-202ENST00000293880 CNOT1A5YKK6 2376 aaKnown RBP12.97□□□□□ -0.33
SSRP1-202ENST00000293880 F5H768 121 aa12.97□□□□□ -0.33
SSRP1-202ENST00000293880 ZNF726P1Q15940 193 aa12.97□□□□□ -0.33
SSRP1-202ENST00000293880 BPESC1Q9GZL8 116 aa12.97□□□□□ -0.33
SSRP1-202ENST00000293880 SCRT2Q9NQ03 307 aa12.97□□□□□ -0.33
SSRP1-202ENST00000293880 SPANXA1Q9NS26 97 aa12.97□□□□□ -0.33
SSRP1-202ENST00000293880 DEFB105AQ8NG35 78 aa12.97□□□□□ -0.33
SSRP1-202ENST00000293880 LYL1P12980 280 aa12.96□□□□□ -0.33
SSRP1-202ENST00000293880 UNQ6494/PRO21346Q6UXR6 183 aa12.96□□□□□ -0.33
SSRP1-202ENST00000293880 C20orf144Q9BQM9 153 aa12.96□□□□□ -0.33
SSRP1-202ENST00000293880 GFRA4Q9GZZ7 299 aa12.96□□□□□ -0.33
SSRP1-202ENST00000293880 LY96Q9Y6Y9 160 aa12.96□□□□□ -0.33
SSRP1-202ENST00000293880 LINC01559Q495D7 138 aa12.96□□□□□ -0.33
SSRP1-202ENST00000293880 IGHV4-28A0A0C4DH34 117 aa12.96□□□□□ -0.33
SSRP1-202ENST00000293880 A0A0U1RQV1 116 aa12.96□□□□□ -0.33
SSRP1-202ENST00000293880 ZNF561-AS1K7EIQ3 104 aa12.96□□□□□ -0.33
SSRP1-202ENST00000293880 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.96□□□□□ -0.34
SSRP1-202ENST00000293880 Q71RC1 249 aaPredicted RBP12.96□□□□□ -0.34
SSRP1-202ENST00000293880 I3L3M4 83 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms