RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 PET117Q6UWS5 81 aa12.84□□□□□ -0.35
HOXD3-201ENST00000249440 ARL6IP6Q8N6S5 226 aa12.84□□□□□ -0.35
HOXD3-201ENST00000249440 TMUB1Q9BVT8 246 aa12.84□□□□□ -0.35
HOXD3-201ENST00000249440 NDUFB8O95169 186 aa12.84□□□□□ -0.35
HOXD3-201ENST00000249440 TMEM11P17152 192 aa12.84□□□□□ -0.35
HOXD3-201ENST00000249440 SAPCD1Q5SSQ6 148 aa12.84□□□□□ -0.35
HOXD3-201ENST00000249440 AP5S1Q9NUS5 200 aa12.84□□□□□ -0.35
HOXD3-201ENST00000249440 CHD6Q8TD26 2715 aa12.84□□□□□ -0.35
HOXD3-201ENST00000249440 HRNRQ86YZ3 2850 aaPredicted RBP12.83□□□□□ -0.36
HOXD3-201ENST00000249440 TMEM189A5PLL7 270 aa12.83□□□□□ -0.36
HOXD3-201ENST00000249440 OR2T8A6NH00 312 aa12.83□□□□□ -0.36
HOXD3-201ENST00000249440 HINT1P49773 126 aaPredicted RBP12.83□□□□□ -0.36
HOXD3-201ENST00000249440 ZNF493Q6ZR52 646 aa12.83□□□□□ -0.36
HOXD3-201ENST00000249440 FBLL1A6NHQ2 334 aaKnown RBP12.83□□□□□ -0.36
HOXD3-201ENST00000249440 HSBP1L1C9JCN9 74 aa12.83□□□□□ -0.36
HOXD3-201ENST00000249440 IGHV3-23P01764 117 aa12.83□□□□□ -0.36
HOXD3-201ENST00000249440 S100A7P31151 101 aa12.83□□□□□ -0.36
HOXD3-201ENST00000249440 RABAC1Q9UI14 185 aa12.83□□□□□ -0.36
HOXD3-201ENST00000249440 PRB1P04280 392 aa12.82□□□□□ -0.36
HOXD3-201ENST00000249440 CTSGP08311 255 aa12.82□□□□□ -0.36
HOXD3-201ENST00000249440 PRSS3P2Q8NHM4 247 aa12.82□□□□□ -0.36
HOXD3-201ENST00000249440 BBC3Q96PG8 261 aaPredicted RBP12.82□□□□□ -0.36
HOXD3-201ENST00000249440 CSMD1Q96PZ7 3565 aa12.82□□□□□ -0.36
HOXD3-201ENST00000249440 COX8CQ7Z4L0 72 aa12.82□□□□□ -0.36
HOXD3-201ENST00000249440 DTX2Q86UW9 622 aa12.82□□□□□ -0.36
HOXD3-201ENST00000249440 IGHV7-81A0A0B4J1V7 117 aa12.81□□□□□ -0.36
HOXD3-201ENST00000249440 SH2D1AO60880 128 aa12.81□□□□□ -0.36
HOXD3-201ENST00000249440 LYZL1Q6UWQ5 148 aa12.81□□□□□ -0.36
HOXD3-201ENST00000249440 FA2HQ7L5A8 372 aa12.81□□□□□ -0.36
HOXD3-201ENST00000249440 FAM106CPP0CH98 169 aa12.8□□□□□ -0.36
HOXD3-201ENST00000249440 ZFP36P26651 326 aaKnown RBP12.8□□□□□ -0.36
HOXD3-201ENST00000249440 RELQ04864 619 aaPredicted RBP12.8□□□□□ -0.36
HOXD3-201ENST00000249440 PRR25Q96S07 402 aa12.8□□□□□ -0.36
HOXD3-201ENST00000249440 IGKV2-40A0A087WW87 121 aaPredicted RBP12.8□□□□□ -0.36
HOXD3-201ENST00000249440 hDV102S1A0JD36 115 aa12.8□□□□□ -0.36
HOXD3-201ENST00000249440 TMEM8BA6NDV4 472 aa12.8□□□□□ -0.36
HOXD3-201ENST00000249440 IGKV2D-40P01614 121 aaPredicted RBP12.8□□□□□ -0.36
HOXD3-201ENST00000249440 EGR2P11161 476 aaPredicted RBP12.8□□□□□ -0.36
HOXD3-201ENST00000249440 TMSB15BA0A087X1C1 80 aa12.79□□□□□ -0.36
HOXD3-201ENST00000249440 OR10AG1Q8NH19 301 aa12.79□□□□□ -0.36
HOXD3-201ENST00000249440 TIMM8BQ9Y5J9 83 aaPredicted RBP12.79□□□□□ -0.36
HOXD3-201ENST00000249440 Q8N9W7 124 aa12.79□□□□□ -0.36
HOXD3-201ENST00000249440 SIRPDQ9H106 197 aa12.79□□□□□ -0.36
HOXD3-201ENST00000249440 ZNF462Q96JM2 2506 aa12.78□□□□□ -0.36
HOXD3-201ENST00000249440 H0Y8G0 127 aa12.78□□□□□ -0.36
HOXD3-201ENST00000249440 BMI1P35226 326 aa12.78□□□□□ -0.36
HOXD3-201ENST00000249440 ORAOV1Q8WV07 137 aa12.78□□□□□ -0.36
HOXD3-201ENST00000249440 SMAD5-AS1Q9Y6J3 95 aa12.78□□□□□ -0.36
HOXD3-201ENST00000249440 SPTBN1Q01082 2364 aaKnown RBP12.78□□□□□ -0.36
HOXD3-201ENST00000249440 D6R8Y8 96 aa12.78□□□□□ -0.36
HOXD3-201ENST00000249440 RPS20P60866 119 aaKnown RBP12.78□□□□□ -0.36
HOXD3-201ENST00000249440 LINC01545Q5VT33 79 aa12.78□□□□□ -0.36
HOXD3-201ENST00000249440 FAM104BQ5XKR9 115 aa12.78□□□□□ -0.36
HOXD3-201ENST00000249440 SLC25A34Q6PIV7 304 aa12.78□□□□□ -0.36
HOXD3-201ENST00000249440 ZNF747Q9BV97 191 aa12.78□□□□□ -0.36
HOXD3-201ENST00000249440 MS4A6AQ9H2W1 248 aa12.78□□□□□ -0.36
HOXD3-201ENST00000249440 TMEM213A2RRL7 107 aa12.77□□□□□ -0.36
HOXD3-201ENST00000249440 UQCRFS1P47985 274 aa12.77□□□□□ -0.36
HOXD3-201ENST00000249440 ORMDL3Q8N138 153 aa12.77□□□□□ -0.36
HOXD3-201ENST00000249440 KMT2BQ9UMN6 2715 aaPredicted RBP12.77□□□□□ -0.37
HOXD3-201ENST00000249440 IFI27P40305 119 aaPredicted RBP12.77□□□□□ -0.37
HOXD3-201ENST00000249440 FAM110DQ8TAY7 271 aaPredicted RBP12.77□□□□□ -0.37
HOXD3-201ENST00000249440 U3KQK5 164 aa12.77□□□□□ -0.37
HOXD3-201ENST00000249440 RAB9AP51151 201 aa12.76□□□□□ -0.37
HOXD3-201ENST00000249440 UBE2E1P51965 193 aa12.76□□□□□ -0.37
HOXD3-201ENST00000249440 C15orf32Q32M92 178 aa12.76□□□□□ -0.37
HOXD3-201ENST00000249440 AMN1Q8IY45 258 aa12.76□□□□□ -0.37
HOXD3-201ENST00000249440 PRELID3AQ96N28 172 aa12.76□□□□□ -0.37
HOXD3-201ENST00000249440 VGLL1Q99990 258 aa12.76□□□□□ -0.37
HOXD3-201ENST00000249440 UNQ5815/PRO19632Q6UWF5 114 aa12.76□□□□□ -0.37
HOXD3-201ENST00000249440 ZNF738Q8NE65 137 aa12.76□□□□□ -0.37
HOXD3-201ENST00000249440 Q8TAT8 98 aa12.76□□□□□ -0.37
HOXD3-201ENST00000249440 MCRIP2Q9BUT9 160 aaKnown RBP12.76□□□□□ -0.37
HOXD3-201ENST00000249440 SCRT2Q9NQ03 307 aa12.76□□□□□ -0.37
HOXD3-201ENST00000249440 MED13LQ71F56 2210 aa12.75□□□□□ -0.37
HOXD3-201ENST00000249440 IGHG4P01861 327 aa12.75□□□□□ -0.37
HOXD3-201ENST00000249440 GPR183P32249 361 aa12.75□□□□□ -0.37
HOXD3-201ENST00000249440 FER1L6-AS1Q8NA97 138 aa12.75□□□□□ -0.37
HOXD3-201ENST00000249440 ZNF502Q8TBZ5 544 aa12.75□□□□□ -0.37
HOXD3-201ENST00000249440 SIGLEC8Q9NYZ4 499 aa12.75□□□□□ -0.37
HOXD3-201ENST00000249440 COX11Q9Y6N1 276 aa12.75□□□□□ -0.37
HOXD3-201ENST00000249440 IGHV3-35A0A0C4DH35 117 aa12.74□□□□□ -0.37
HOXD3-201ENST00000249440 IGHV2-70DA0A0C4DH43 119 aa12.74□□□□□ -0.37
HOXD3-201ENST00000249440 LOC389332A0A1B0GUA5 103 aa12.74□□□□□ -0.37
HOXD3-201ENST00000249440 NDUFS7O75251 213 aa12.74□□□□□ -0.37
HOXD3-201ENST00000249440 ECSCRQ19T08 205 aa12.74□□□□□ -0.37
HOXD3-201ENST00000249440 IGFL4Q6B9Z1 124 aa12.74□□□□□ -0.37
HOXD3-201ENST00000249440 CRYBG3Q68DQ2 2970 aa12.74□□□□□ -0.37
HOXD3-201ENST00000249440 CLEC3BP05452 202 aa12.74□□□□□ -0.37
HOXD3-201ENST00000249440 ZNF80P51504 273 aaPredicted RBP12.74□□□□□ -0.37
HOXD3-201ENST00000249440 SRSF2Q01130 221 aaKnown RBP12.74□□□□□ -0.37
HOXD3-201ENST00000249440 TWIST1Q15672 202 aa12.74□□□□□ -0.37
HOXD3-201ENST00000249440 MYO18BQ8IUG5 2567 aa12.74□□□□□ -0.37
HOXD3-201ENST00000249440 IGHV3OR16-8A0A075B7F1 116 aa12.73□□□□□ -0.37
HOXD3-201ENST00000249440 A0A1W2PPR1 153 aa12.73□□□□□ -0.37
HOXD3-201ENST00000249440 HLA-DMBP28068 263 aa12.73□□□□□ -0.37
HOXD3-201ENST00000249440 KLK9Q2XQG4 91 aa12.73□□□□□ -0.37
HOXD3-201ENST00000249440 MRPL51Q4U2R6 128 aaKnown RBP12.73□□□□□ -0.37
HOXD3-201ENST00000249440 MPV17L2Q567V2 206 aa12.73□□□□□ -0.37
HOXD3-201ENST00000249440 PMCHL2Q9BQD1 86 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms