RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PRB4P10163 310 aaPredicted RBP13.5□□□□□ -0.25
CLN3-262ENST00000637699 ANXA7P20073 488 aaKnown RBP13.5□□□□□ -0.25
CLN3-262ENST00000637699 TAS2R60P59551 318 aa13.5□□□□□ -0.25
CLN3-262ENST00000637699 KRTAP10-2P60368 255 aa13.5□□□□□ -0.25
CLN3-262ENST00000637699 KRTAP1-5Q9BYS1 174 aa13.5□□□□□ -0.25
CLN3-262ENST00000637699 NOP10Q9NPE3 64 aaKnown RBP13.5□□□□□ -0.25
CLN3-262ENST00000637699 TIMM8BQ9Y5J9 83 aaPredicted RBP13.5□□□□□ -0.25
CLN3-262ENST00000637699 CENPXA8MT69 81 aa13.49□□□□□ -0.25
CLN3-262ENST00000637699 PRSS46E5RG02 174 aa13.49□□□□□ -0.25
CLN3-262ENST00000637699 PLA2G10O15496 165 aa13.49□□□□□ -0.25
CLN3-262ENST00000637699 S100A7P31151 101 aa13.49□□□□□ -0.25
CLN3-262ENST00000637699 AKR1C1Q04828 323 aa13.49□□□□□ -0.25
CLN3-262ENST00000637699 OR5I1Q13606 314 aa13.49□□□□□ -0.25
CLN3-262ENST00000637699 TMEM144Q7Z5S9 345 aa13.49□□□□□ -0.25
CLN3-262ENST00000637699 TMEM256Q8N2U0 113 aa13.49□□□□□ -0.25
CLN3-262ENST00000637699 C16orf74Q96GX8 76 aa13.49□□□□□ -0.25
CLN3-262ENST00000637699 RPP30P78346 268 aaKnown RBP13.48□□□□□ -0.25
CLN3-262ENST00000637699 ID3Q02535 119 aa13.48□□□□□ -0.25
CLN3-262ENST00000637699 OR8A1Q8NGG7 326 aa13.48□□□□□ -0.25
CLN3-262ENST00000637699 CIB3Q96Q77 187 aaPredicted RBP13.48□□□□□ -0.25
CLN3-262ENST00000637699 TRAV26-1A0A087WT03 109 aa13.47□□□□□ -0.25
CLN3-262ENST00000637699 H3BP45 60 aa13.47□□□□□ -0.25
CLN3-262ENST00000637699 H3BRN7 92 aa13.47□□□□□ -0.25
CLN3-262ENST00000637699 DLK1P80370 383 aa13.47□□□□□ -0.25
CLN3-262ENST00000637699 C4orf46Q504U0 113 aa13.47□□□□□ -0.25
CLN3-262ENST00000637699 TTC32Q5I0X7 151 aa13.47□□□□□ -0.25
CLN3-262ENST00000637699 SPANXN5Q5MJ07 72 aa13.47□□□□□ -0.25
CLN3-262ENST00000637699 GNPNAT1Q96EK6 184 aaPredicted RBP13.47□□□□□ -0.25
CLN3-262ENST00000637699 A0A0J9YY99 117 aa13.46□□□□□ -0.25
CLN3-262ENST00000637699 RPL7P18124 248 aaKnown RBP13.46□□□□□ -0.25
CLN3-262ENST00000637699 CXCL3P19876 107 aa13.46□□□□□ -0.25
CLN3-262ENST00000637699 RAP2BP61225 183 aa13.46□□□□□ -0.25
CLN3-262ENST00000637699 POLR2GP62487 172 aaKnown RBP eCLIP13.46□□□□□ -0.25
CLN3-262ENST00000637699 ACOT7LQ6ZUV0 252 aa13.46□□□□□ -0.25
CLN3-262ENST00000637699 SHANK2-AS3Q9BTD1 123 aa13.46□□□□□ -0.25
CLN3-262ENST00000637699 Q9H3A6 140 aa13.46□□□□□ -0.25
CLN3-262ENST00000637699 HIGD1AQ9Y241 93 aa13.46□□□□□ -0.25
CLN3-262ENST00000637699 SMCO3A2RU48 225 aa13.45□□□□□ -0.26
CLN3-262ENST00000637699 IL5P05113 134 aa13.45□□□□□ -0.26
CLN3-262ENST00000637699 PSG3Q16557 428 aa13.45□□□□□ -0.26
CLN3-262ENST00000637699 ZNF493Q6ZR52 646 aa13.45□□□□□ -0.26
CLN3-262ENST00000637699 OR10J6PQ8NGY7 276 aa13.45□□□□□ -0.26
CLN3-262ENST00000637699 LRRC20Q8TCA0 184 aa13.45□□□□□ -0.26
CLN3-262ENST00000637699 RNASE8Q8TDE3 154 aaKnown RBP13.45□□□□□ -0.26
CLN3-262ENST00000637699 LYRM1O43325 122 aa13.44□□□□□ -0.26
CLN3-262ENST00000637699 OR5G3P0C626 314 aa13.44□□□□□ -0.26
CLN3-262ENST00000637699 M6PRP20645 277 aa13.44□□□□□ -0.26
CLN3-262ENST00000637699 ESRGQ1W209 222 aa13.44□□□□□ -0.26
CLN3-262ENST00000637699 CYP2G1PQ6ZSU1 146 aa13.44□□□□□ -0.26
CLN3-262ENST00000637699 RXFP4Q8TDU9 374 aa13.44□□□□□ -0.26
CLN3-262ENST00000637699 TMEM263Q8WUH6 116 aaKnown RBP13.44□□□□□ -0.26
CLN3-262ENST00000637699 STRAPQ9Y3F4 350 aaKnown RBP13.44□□□□□ -0.26
CLN3-262ENST00000637699 HYPMO75409 117 aa13.43□□□□□ -0.26
CLN3-262ENST00000637699 BTF3P20290 206 aaKnown RBP13.43□□□□□ -0.26
CLN3-262ENST00000637699 CDKN1BP46527 198 aa13.43□□□□□ -0.26
CLN3-262ENST00000637699 MITD1Q8WV92 249 aa13.43□□□□□ -0.26
CLN3-262ENST00000637699 RPUSD4Q96CM3 377 aaKnown RBP13.43□□□□□ -0.26
CLN3-262ENST00000637699 C20orf85Q9H1P6 137 aa13.43□□□□□ -0.26
CLN3-262ENST00000637699 GAGE12BA1L429 117 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 H7BYZ3 331 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 GAGE7O76087 117 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 LINC00869P0C866 280 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 GAGE12FP0CL80 117 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 GAGE12GP0CL81 117 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 GAGE12IP0CL82 117 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 HOXA5P20719 270 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 KIR3DS1Q14943 382 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 CNPY1Q3B7I2 92 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 ZNF503Q96F45 646 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 ZNF586Q9NXT0 402 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 PSENENQ9NZ42 101 aa13.42□□□□□ -0.26
CLN3-262ENST00000637699 FAT1Q14517 4588 aa13.41□□□□□ -0.26
CLN3-262ENST00000637699 A0A087X0K7 114 aa13.41□□□□□ -0.26
CLN3-262ENST00000637699 PMS2P5A8MQ11 134 aa13.41□□□□□ -0.26
CLN3-262ENST00000637699 EPM2AB3EWF7 344 aa13.41□□□□□ -0.26
CLN3-262ENST00000637699 SSSCA1O60232 199 aa13.41□□□□□ -0.26
CLN3-262ENST00000637699 TCRBP04435 133 aa13.41□□□□□ -0.26
CLN3-262ENST00000637699 IAH1Q2TAA2 248 aaPredicted RBP13.41□□□□□ -0.26
CLN3-262ENST00000637699 SMIM8Q96KF7 97 aa13.41□□□□□ -0.26
CLN3-262ENST00000637699 UPK3BQ9BT76 320 aa13.41□□□□□ -0.26
CLN3-262ENST00000637699 PARD6GQ9BYG4 376 aaPredicted RBP13.41□□□□□ -0.26
CLN3-262ENST00000637699 TRAV6A0A075B6T7 132 aa13.4□□□□□ -0.26
CLN3-262ENST00000637699 A0A1W2PPQ1 181 aa13.4□□□□□ -0.26
CLN3-262ENST00000637699 A6NHS1 94 aa13.4□□□□□ -0.26
CLN3-262ENST00000637699 CCNKO75909 580 aa13.4□□□□□ -0.26
CLN3-262ENST00000637699 CCDC28AQ8IWP9 274 aa13.4□□□□□ -0.26
CLN3-262ENST00000637699 ZBTB8BQ8NAP8 495 aaPredicted RBP13.4□□□□□ -0.26
CLN3-262ENST00000637699 GSKIPQ9P0R6 139 aa13.4□□□□□ -0.26
CLN3-262ENST00000637699 MRPS16Q9Y3D3 137 aaKnown RBP13.4□□□□□ -0.26
CLN3-262ENST00000637699 SCGB1D2O95969 90 aa13.39□□□□□ -0.27
CLN3-262ENST00000637699 SNRPCP09234 159 aaKnown RBP13.39□□□□□ -0.27
CLN3-262ENST00000637699 LINC00612Q8N6U2 182 aa13.39□□□□□ -0.27
CLN3-262ENST00000637699 CCDC32Q9BV29 185 aa13.39□□□□□ -0.27
CLN3-262ENST00000637699 ARL6Q9H0F7 186 aa13.39□□□□□ -0.27
CLN3-262ENST00000637699 CCSO14618 274 aa13.38□□□□□ -0.27
CLN3-262ENST00000637699 RLN2P04090 185 aa13.38□□□□□ -0.27
CLN3-262ENST00000637699 PLP1P60201 277 aa13.38□□□□□ -0.27
CLN3-262ENST00000637699 RRAS2P62070 204 aaPredicted RBP13.38□□□□□ -0.27
CLN3-262ENST00000637699 SELENOTP62341 195 aa13.38□□□□□ -0.27
CLN3-262ENST00000637699 TMEM14EPQ6UXP3 125 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms