RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 GTF2H5Q6ZYL4 71 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 TMEM116Q8NCL8 245 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 RCHY1Q96PM5 261 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 TIMM8BQ9Y5J9 83 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-214ENST00000637038 COX11Q9Y6N1 276 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 TACC2O95359 2948 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 MED13Q9UHV7 2174 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 ANKRD11Q6UB99 2663 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-214ENST00000637038 IGKV1OR2-108A0A075B7D4 117 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 SYS1-DBNDD2H3BUS1 97 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 OVOL3O00110 214 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 LTAP01374 205 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 CD3EP07766 207 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 ZNF137PP52743 207 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 LINC00310P59036 64 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 HOXA4Q00056 320 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-214ENST00000637038 HIST1H1AQ02539 215 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-214ENST00000637038 WT1-ASQ06250 92 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 Q86TA4 180 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 ATOH7Q8N100 152 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 KAAG1Q9UBP8 84 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 F11RQ9Y624 299 aaKnown RBP3.19□□□□□ -1.9
SCN1A-214ENST00000637038 IGF2RP11717 2491 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 LOC102724200A0A096LPH7 203 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-214ENST00000637038 A0A1B0GXF2 115 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 A0A1W2PPI3 338 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 IGHV1-8P0DP01 117 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 GPR6P46095 362 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-214ENST00000637038 HERV-K104P63124 156 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 FAM27E3Q08E93 113 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 TMEM155Q4W5P6 130 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 GOLT1AQ6ZVE7 132 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 TCF24Q7RTU0 167 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 TMEM75Q8N9X5 138 aa3.19□□□□□ -1.9
SCN1A-214ENST00000637038 PEF1Q9UBV8 284 aaKnown RBP3.19□□□□□ -1.9
SCN1A-214ENST00000637038 CBY3A6NI87 242 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 TFPI2P48307 235 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 CRYBA4P53673 196 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 ARF6P62330 175 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 SEC11AP67812 179 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 PPP1R27Q86WC6 154 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 MUC15Q8N387 334 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 SRSF12Q8WXF0 261 aaKnown RBP3.18□□□□□ -1.9
SCN1A-214ENST00000637038 TPPP3Q9BW30 176 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 SSBP4Q9BWG4 385 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-214ENST00000637038 DOCK7Q96N67 2140 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 DOCK11Q5JSL3 2073 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 LOC105371242A0A075B767 164 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 PSMB11A5LHX3 300 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 TMEM189A5PLL7 270 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 K7ERU9 68 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 GNG7O60262 68 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 RAB9AP51151 201 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 FOXA3P55318 350 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-214ENST00000637038 PDE6HQ13956 83 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 MLANAQ16655 118 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 TDRG1Q3Y452 100 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 C10orf55Q5SWW7 151 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 CCDC144NLQ6NUI1 221 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 OR1N2Q8NGR9 330 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 LINC00479Q96M42 142 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 FNDC4Q9H6D8 234 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-214ENST00000637038 DNAJC13O75165 2243 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 NAV3Q8IVL0 2385 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 NHLRC4P0CG21 123 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-214ENST00000637038 RPL7P18124 248 aaKnown RBP3.18□□□□□ -1.9
SCN1A-214ENST00000637038 MFAP4P55083 255 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 BSPH1Q075Z2 132 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 MSMPQ1L6U9 139 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 LCN12Q6JVE5 192 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 PATE2Q6UY27 113 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 STPG4Q8N801 248 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 SLC25A39Q9BZJ4 359 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-214ENST00000637038 SIGLEC9Q9Y336 463 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 FAM215AQ9Y5M1 114 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 CELSR1Q9NYQ6 3014 aa3.18□□□□□ -1.9
SCN1A-214ENST00000637038 SPTBN1Q01082 2364 aaKnown RBP3.18□□□□□ -1.9
SCN1A-214ENST00000637038 CACNA1DQ01668 2161 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 IGLC7A0M8Q6 106 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 FAM90A27PA6NNH2 459 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 CSN3P07498 182 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 GP9P14770 177 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 COX7A1P24310 79 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 MYCNOSP40205 109 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 DUX4L9Q6RFH8 374 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-214ENST00000637038 C1orf229Q6ZS94 237 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-214ENST00000637038 RPRMLQ8N4K4 120 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 Q96MF0 132 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 VPS25Q9BRG1 176 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 SHANK2-AS3Q9BTD1 123 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 PRSS22Q9GZN4 317 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 PSG8Q9UQ74 426 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 NOTCH2Q04721 2471 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 CHD6Q8TD26 2715 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 LRBAP50851 2863 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 PPIAL4CA0A0B4J2A2 164 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 C19orf71A6NCJ1 209 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 CCL25O15444 150 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 NUDT3O95989 172 aa3.17□□□□□ -1.9
SCN1A-214ENST00000637038 APOHP02749 345 aaPredicted RBP3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms