RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 TRGV4A0A0C4DH28 118 aa12.4□□□□□ -0.42
COL5A1-208ENST00000618395 FAM240AA0A1B0GVK7 77 aa12.4□□□□□ -0.42
COL5A1-208ENST00000618395 IGKV2D-40P01614 121 aaPredicted RBP12.4□□□□□ -0.42
COL5A1-208ENST00000618395 MYOD1P15172 320 aa12.4□□□□□ -0.42
COL5A1-208ENST00000618395 C20orf173Q96LM9 149 aa12.4□□□□□ -0.42
COL5A1-208ENST00000618395 PMS2P5A8MQ11 134 aa12.4□□□□□ -0.42
COL5A1-208ENST00000618395 MORN2Q502X0 79 aa12.4□□□□□ -0.42
COL5A1-208ENST00000618395 FBLN5Q9UBX5 448 aa12.4□□□□□ -0.42
COL5A1-208ENST00000618395 DENND4CQ5VZ89 1909 aa12.4□□□□□ -0.43
COL5A1-208ENST00000618395 SH2D1AO60880 128 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 PFN1P07737 140 aaKnown RBP12.39□□□□□ -0.43
COL5A1-208ENST00000618395 PRCDQ00LT1 54 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 CT55Q8WUE5 264 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 TCF20Q9UGU0 1960 aaKnown RBP12.39□□□□□ -0.43
COL5A1-208ENST00000618395 CRLF1O75462 422 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 LIMS2Q7Z4I7 341 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 C2CD4DB7Z1M9 353 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 C21orf140B9A014 251 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 RNASE2P10153 161 aaKnown RBP12.39□□□□□ -0.43
COL5A1-208ENST00000618395 SRSF2Q01130 221 aaKnown RBP12.39□□□□□ -0.43
COL5A1-208ENST00000618395 ALPK3Q96L96 1907 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 OVOL1O14753 267 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 DUSP14O95147 198 aaKnown RBP12.39□□□□□ -0.43
COL5A1-208ENST00000618395 TIAF1O95411 115 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 NDUFV3P56181 108 aaKnown RBP12.39□□□□□ -0.43
COL5A1-208ENST00000618395 AHDC1Q5TGY3 1603 aaPredicted RBP12.39□□□□□ -0.43
COL5A1-208ENST00000618395 YPEL1O60688 119 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 YPEL2Q96QA6 119 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 IGKV1D-13A0A0B4J2D9 117 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 IGKV1-13P0DP09 117 aa12.39□□□□□ -0.43
COL5A1-208ENST00000618395 SUPT4H1P63272 117 aaKnown RBP12.39□□□□□ -0.43
COL5A1-208ENST00000618395 AHRRA9YTQ3 701 aa12.38□□□□□ -0.43
COL5A1-208ENST00000618395 DEFB123Q8N688 67 aa12.38□□□□□ -0.43
COL5A1-208ENST00000618395 PRR7Q8TB68 274 aa12.38□□□□□ -0.43
COL5A1-208ENST00000618395 ZNF497Q6ZNH5 498 aa12.38□□□□□ -0.43
COL5A1-208ENST00000618395 CHKB-CPT1BH3BT56 60 aa12.38□□□□□ -0.43
COL5A1-208ENST00000618395 KLF2Q9Y5W3 355 aaPredicted RBP12.38□□□□□ -0.43
COL5A1-208ENST00000618395 J3QW42 95 aa12.38□□□□□ -0.43
COL5A1-208ENST00000618395 PTPRQQ9UMZ3 2332 aa12.38□□□□□ -0.43
COL5A1-208ENST00000618395 F8VRH5 84 aa12.38□□□□□ -0.43
COL5A1-208ENST00000618395 IGKV1D-33P01593 117 aa12.38□□□□□ -0.43
COL5A1-208ENST00000618395 IGKV1-33P01594 117 aa12.38□□□□□ -0.43
COL5A1-208ENST00000618395 LINC01545Q5VT33 79 aa12.38□□□□□ -0.43
COL5A1-208ENST00000618395 SIGLEC15Q6ZMC9 328 aa12.38□□□□□ -0.43
COL5A1-208ENST00000618395 TRAV25A0A0B4J276 109 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 IGLC1P0CG04 106 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 TMEM171Q8WVE6 324 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 BAALC-AS2P0C853 105 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 SRSF7Q16629 238 aaKnown RBP eCLIP12.37□□□□□ -0.43
COL5A1-208ENST00000618395 FOXI1Q12951 378 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 LYPD1Q8N2G4 141 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 DAD1P61803 113 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 IGHV3OR16-8A0A075B7F1 116 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 SAA2-SAA4A0A096LPE2 208 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 LINC00271P0C7V0 271 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 SAA2P0DJI9 122 aaPredicted RBP12.37□□□□□ -0.43
COL5A1-208ENST00000618395 PRR31Q5SQ13 230 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 TMEM52Q8NDY8 209 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 DCTN5Q9BTE1 182 aa12.37□□□□□ -0.43
COL5A1-208ENST00000618395 RFNGQ9Y644 331 aa12.36□□□□□ -0.43
COL5A1-208ENST00000618395 STHQ8IWL8 128 aa12.36□□□□□ -0.43
COL5A1-208ENST00000618395 SSC4DQ8WTU2 575 aa12.36□□□□□ -0.43
COL5A1-208ENST00000618395 COL18A1P39060 1754 aa12.36□□□□□ -0.43
COL5A1-208ENST00000618395 LIME1Q9H400 295 aa12.36□□□□□ -0.43
COL5A1-208ENST00000618395 CENPVQ7Z7K6 275 aaPredicted RBP12.36□□□□□ -0.43
COL5A1-208ENST00000618395 C3orf56Q8N813 242 aa12.36□□□□□ -0.43
COL5A1-208ENST00000618395 RNF183Q96D59 192 aa12.36□□□□□ -0.43
COL5A1-208ENST00000618395 ZNF71Q9NQZ8 489 aaPredicted RBP12.36□□□□□ -0.43
COL5A1-208ENST00000618395 THBDP07204 575 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 CFHR2P36980 270 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 CXCL5P42830 114 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 C1orf159Q96HA4 380 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 HLA-DRB4P13762 266 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 FAM90A1Q86YD7 464 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 HLA-DRB4X5D2U9 266 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 CTSBP07858 339 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 FAM166AQ6J272 317 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 Q6ZVH6 145 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 C14orf178Q8N769 122 aaPredicted RBP12.35□□□□□ -0.43
COL5A1-208ENST00000618395 ATP6V0E2Q8NHE4 81 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 TRIP6Q15654 476 aaKnown RBP12.35□□□□□ -0.43
COL5A1-208ENST00000618395 CDPF1Q6NVV7 123 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 UQCRQO14949 82 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 IGFBP6P24592 240 aaPredicted RBP12.35□□□□□ -0.43
COL5A1-208ENST00000618395 MP68P56378 58 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 TRGV9Q99603 122 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 PRRC2AP48634 2157 aaKnown RBP12.35□□□□□ -0.43
COL5A1-208ENST00000618395 SMIM27A0A1W2PRY6 76 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 C9JQL5 133 aa12.35□□□□□ -0.43
COL5A1-208ENST00000618395 RPL36AP83881 106 aaKnown RBP12.35□□□□□ -0.43
COL5A1-208ENST00000618395 RPL36ALQ969Q0 106 aaKnown RBP12.35□□□□□ -0.43
COL5A1-208ENST00000618395 IL9P15248 144 aa12.34□□□□□ -0.43
COL5A1-208ENST00000618395 SPATA31B1PQ5VZV4 182 aa12.34□□□□□ -0.43
COL5A1-208ENST00000618395 LHFPL1Q86WI0 220 aa12.34□□□□□ -0.43
COL5A1-208ENST00000618395 A0A087WX48 190 aa12.34□□□□□ -0.43
COL5A1-208ENST00000618395 TMEM14EPQ6UXP3 125 aa12.34□□□□□ -0.43
COL5A1-208ENST00000618395 ORMDL1Q9P0S3 153 aa12.34□□□□□ -0.43
COL5A1-208ENST00000618395 TP53TG1Q9Y2A0 90 aa12.34□□□□□ -0.43
COL5A1-208ENST00000618395 PRB1P04280 392 aa12.34□□□□□ -0.43
COL5A1-208ENST00000618395 SS18Q15532 418 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms