RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 OR2K2Q8NGT1 345 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 SRRM4A7MD48 611 aaKnown RBP11.17□□□□□ -0.62
CIITA-213ENST00000618327 Q6AWC8 147 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 C1orf122Q6ZSJ8 110 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 SCRT1Q9BWW7 348 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 NHP2Q9NX24 153 aaKnown RBP11.17□□□□□ -0.62
CIITA-213ENST00000618327 PSMB11A5LHX3 300 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 ADMP35318 185 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 Q96MF0 132 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 SCGB3A1Q96QR1 104 aa11.17□□□□□ -0.62
CIITA-213ENST00000618327 KLF2Q9Y5W3 355 aaPredicted RBP11.17□□□□□ -0.62
CIITA-213ENST00000618327 A0A1B0GW64 132 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 SPSB3Q6PJ21 355 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 C22orf34Q6ZV56 151 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 OR13C6PQ8NH95 151 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 REG4Q9BYZ8 158 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 FNDC4Q9H6D8 234 aaPredicted RBP11.16□□□□□ -0.62
CIITA-213ENST00000618327 MUC21A0A0G2JKD1 596 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 MUC21A0A140T8X8 626 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 M0R381 172 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 POU2AF1Q16633 256 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 MUC21Q5SSG8 566 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 FAM159AQ6UWV7 190 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 SPTBN4Q9H254 2564 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 A0A1B0GW15 77 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 DAZAP2Q15038 168 aaPredicted RBP11.16□□□□□ -0.62
CIITA-213ENST00000618327 RNASE7Q9H1E1 156 aaKnown RBP11.16□□□□□ -0.62
CIITA-213ENST00000618327 TPSG1Q9NRR2 321 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 PEMTQ9UBM1 199 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 PTPN13Q12923 2485 aa11.16□□□□□ -0.62
CIITA-213ENST00000618327 PMS2P5A8MQ11 134 aa11.15□□□□□ -0.62
CIITA-213ENST00000618327 AMBPP02760 352 aa11.15□□□□□ -0.62
CIITA-213ENST00000618327 EML5Q05BV3 1969 aa11.15□□□□□ -0.62
CIITA-213ENST00000618327 TRBV7-1A0A0A6YYK4 115 aa11.15□□□□□ -0.62
CIITA-213ENST00000618327 PGPEP1LA6NFU8 196 aa11.15□□□□□ -0.62
CIITA-213ENST00000618327 GFI1BQ5VTD9 330 aa11.15□□□□□ -0.62
CIITA-213ENST00000618327 CIARTQ8N365 385 aaPredicted RBP11.15□□□□□ -0.62
CIITA-213ENST00000618327 CSPG4Q6UVK1 2322 aa11.15□□□□□ -0.62
CIITA-213ENST00000618327 IGHV3OR16-12A0A075B7B8 117 aa11.15□□□□□ -0.62
CIITA-213ENST00000618327 TRAV8-2A0A0B4J237 113 aa11.15□□□□□ -0.62
CIITA-213ENST00000618327 RRN3P1Q2M238 152 aa11.15□□□□□ -0.62
CIITA-213ENST00000618327 TNRC6AQ8NDV7 1962 aaKnown RBP11.15□□□□□ -0.63
CIITA-213ENST00000618327 ZNF329Q86UD4 541 aa11.15□□□□□ -0.63
CIITA-213ENST00000618327 OCC1Q8TAD7 63 aa11.15□□□□□ -0.63
CIITA-213ENST00000618327 ATP6V0E1O15342 81 aa11.14□□□□□ -0.63
CIITA-213ENST00000618327 C11orf44Q8N8P7 122 aa11.14□□□□□ -0.63
CIITA-213ENST00000618327 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.14□□□□□ -0.63
CIITA-213ENST00000618327 RPL15P61313 204 aaKnown RBP11.14□□□□□ -0.63
CIITA-213ENST00000618327 WT1-ASQ06250 92 aa11.14□□□□□ -0.63
CIITA-213ENST00000618327 SIGMAR1Q99720 223 aa11.14□□□□□ -0.63
CIITA-213ENST00000618327 DLEU1O43261 78 aa11.14□□□□□ -0.63
CIITA-213ENST00000618327 SFTA2Q6UW10 78 aa11.14□□□□□ -0.63
CIITA-213ENST00000618327 OSTCQ9NRP0 149 aa11.14□□□□□ -0.63
CIITA-213ENST00000618327 CRIP3Q6Q6R5 217 aa11.14□□□□□ -0.63
CIITA-213ENST00000618327 USMG5Q96IX5 58 aa11.14□□□□□ -0.63
CIITA-213ENST00000618327 SSBP4Q9BWG4 385 aaPredicted RBP11.14□□□□□ -0.63
CIITA-213ENST00000618327 OR5A1Q8NGJ0 315 aa11.13□□□□□ -0.63
CIITA-213ENST00000618327 DTX2Q86UW9 622 aa11.13□□□□□ -0.63
CIITA-213ENST00000618327 TMEM242Q9NWH2 141 aa11.13□□□□□ -0.63
CIITA-213ENST00000618327 C9JCJ5 164 aa11.13□□□□□ -0.63
CIITA-213ENST00000618327 IGHV4-39P01824 125 aa11.13□□□□□ -0.63
CIITA-213ENST00000618327 CXCL1P09341 107 aa11.13□□□□□ -0.63
CIITA-213ENST00000618327 RIPPLY3P57055 190 aa11.13□□□□□ -0.63
CIITA-213ENST00000618327 NUTF2P61970 127 aaKnown RBP11.13□□□□□ -0.63
CIITA-213ENST00000618327 ORAOV1Q8WV07 137 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 PSG8Q9UQ74 426 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 IGKV3OR2-268A0A0C4DH90 116 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 FAM223BA6NKX1 122 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 TOMM40O96008 361 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 TMEM95Q3KNT9 176 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 PYY3Q5JQD4 70 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 TEX38Q6PEX7 206 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 C1QL4Q86Z23 238 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 FAM223AQ8IWN6 122 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 FAM110DQ8TAY7 271 aaPredicted RBP11.12□□□□□ -0.63
CIITA-213ENST00000618327 FER1L6-AS1Q8NA97 138 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 RANBP2P49792 3224 aaKnown RBP11.12□□□□□ -0.63
CIITA-213ENST00000618327 IGHV4-61A0A0C4DH41 118 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 J3QLI3 93 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 MST1LQ2TV78 715 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 SIGLEC15Q6ZMC9 328 aa11.12□□□□□ -0.63
CIITA-213ENST00000618327 HAPLN4Q86UW8 402 aa11.11□□□□□ -0.63
CIITA-213ENST00000618327 OR11H6Q8NGC7 330 aa11.11□□□□□ -0.63
CIITA-213ENST00000618327 SEC11AP67812 179 aa11.11□□□□□ -0.63
CIITA-213ENST00000618327 EXOC3-AS1Q8N2X6 119 aa11.11□□□□□ -0.63
CIITA-213ENST00000618327 GNB1LQ9BYB4 327 aa11.11□□□□□ -0.63
CIITA-213ENST00000618327 G3V318 75 aa11.11□□□□□ -0.63
CIITA-213ENST00000618327 NDUFA3O95167 84 aa11.11□□□□□ -0.63
CIITA-213ENST00000618327 HOXB4P17483 251 aaPredicted RBP11.11□□□□□ -0.63
CIITA-213ENST00000618327 CR1LQ2VPA4 569 aa11.11□□□□□ -0.63
CIITA-213ENST00000618327 H7C1H1 209 aa11.1□□□□□ -0.63
CIITA-213ENST00000618327 C1orf194Q5T5A4 169 aa11.1□□□□□ -0.63
CIITA-213ENST00000618327 ANAPC13Q9BS18 74 aa11.1□□□□□ -0.63
CIITA-213ENST00000618327 ST20Q9HBF5 79 aa11.1□□□□□ -0.63
CIITA-213ENST00000618327 ARFGEF3Q5TH69 2177 aa11.1□□□□□ -0.63
CIITA-213ENST00000618327 NDUFB8O95169 186 aa11.1□□□□□ -0.63
CIITA-213ENST00000618327 HBDP02042 147 aa11.1□□□□□ -0.63
CIITA-213ENST00000618327 FABP5P3A8MUU1 101 aa11.1□□□□□ -0.63
CIITA-213ENST00000618327 ASIPP42127 132 aa11.1□□□□□ -0.63
CIITA-213ENST00000618327 TMEM262E9PQX1 116 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms