RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SYS1-DBNDD2H3BUS1 97 aa11.35□□□□□ -0.59
CPSF1-212ENST00000616140 AMN1Q8IY45 258 aa11.35□□□□□ -0.59
CPSF1-212ENST00000616140 ZNF479Q96JC4 524 aa11.35□□□□□ -0.59
CPSF1-212ENST00000616140 A0A087X0K7 114 aa11.35□□□□□ -0.59
CPSF1-212ENST00000616140 H3BUX3 64 aa11.35□□□□□ -0.59
CPSF1-212ENST00000616140 SH2D1AO60880 128 aa11.35□□□□□ -0.59
CPSF1-212ENST00000616140 PSG3Q16557 428 aa11.35□□□□□ -0.59
CPSF1-212ENST00000616140 NCOA6Q14686 2063 aaPredicted RBP11.35□□□□□ -0.59
CPSF1-212ENST00000616140 E7EQL1 145 aa11.35□□□□□ -0.59
CPSF1-212ENST00000616140 IL15RAQ13261 267 aa11.35□□□□□ -0.59
CPSF1-212ENST00000616140 PEMTQ9UBM1 199 aa11.35□□□□□ -0.59
CPSF1-212ENST00000616140 TOMM40O96008 361 aa11.34□□□□□ -0.59
CPSF1-212ENST00000616140 DUX4L9Q6RFH8 374 aaPredicted RBP11.34□□□□□ -0.59
CPSF1-212ENST00000616140 OR9G4Q8NGQ1 327 aa11.34□□□□□ -0.59
CPSF1-212ENST00000616140 A0A0U1RRA0 63 aa11.34□□□□□ -0.59
CPSF1-212ENST00000616140 ZNF329Q86UD4 541 aa11.34□□□□□ -0.59
CPSF1-212ENST00000616140 VDAC2P45880 294 aaPredicted RBP11.34□□□□□ -0.59
CPSF1-212ENST00000616140 LAGE3Q14657 143 aa11.34□□□□□ -0.59
CPSF1-212ENST00000616140 LYPD1Q8N2G4 141 aa11.34□□□□□ -0.59
CPSF1-212ENST00000616140 TRAV2A0A0B4J234 112 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 SMKR1H3BMG3 65 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 ARMS2P0C7Q2 107 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 CNTFRP26992 372 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 BCL6BQ8N143 479 aaPredicted RBP11.33□□□□□ -0.6
CPSF1-212ENST00000616140 IGHV3-64A0A075B6Q5 118 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 TMEM8BA6NDV4 472 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 IGLV3-1P01715 115 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 C9orf139Q6ZV77 190 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 Q86TA4 180 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 LSM4Q9Y4Z0 139 aaKnown RBP11.33□□□□□ -0.6
CPSF1-212ENST00000616140 A0A1B0GV72 72 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 ZC2HC1BQ5TFG8 222 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 HAPLN4Q86UW8 402 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 SMPXQ9UHP9 88 aa11.33□□□□□ -0.6
CPSF1-212ENST00000616140 TRBV7-9A0A0J9YWB2 115 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 CD28P10747 220 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 PRTN3P24158 256 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 TMEM249Q2WGJ8 235 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 STHQ8IWL8 128 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 PIEZO2Q9H5I5 2752 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 M0R1W7 72 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 HOXA3O43365 443 aaPredicted RBP11.32□□□□□ -0.6
CPSF1-212ENST00000616140 TSPAN13O95857 204 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 TMEM155Q4W5P6 130 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 HTN3P15516 51 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 PLNP26678 52 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 SAMD5Q5TGI4 173 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 RNF182Q8N6D2 247 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 TMEM190Q8WZ59 177 aa11.32□□□□□ -0.6
CPSF1-212ENST00000616140 TRAV8-2A0A0B4J237 113 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 GGTLC3B5MD39 225 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 C10orf91Q5T1B1 145 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 C14orf178Q8N769 122 aaPredicted RBP11.31□□□□□ -0.6
CPSF1-212ENST00000616140 OR5A1Q8NGJ0 315 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 NDUFA4L2Q9NRX3 87 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 A8MWP6 167 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 EREGO14944 169 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 Q0VG73 95 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 ZNF114Q8NC26 417 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 C18orf32Q8TCD1 76 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 SHANK2-AS3Q9BTD1 123 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 OTOGLQ3ZCN5 2332 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 SORL1Q92673 2214 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 TICRRQ7Z2Z1 1910 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 FCN3O75636 299 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 BPESC1Q9GZL8 116 aa11.31□□□□□ -0.6
CPSF1-212ENST00000616140 ZNF134P52741 427 aa11.3□□□□□ -0.6
CPSF1-212ENST00000616140 RNF166Q96A37 237 aaPredicted RBP11.3□□□□□ -0.6
CPSF1-212ENST00000616140 MMP23AO75900 390 aa11.3□□□□□ -0.6
CPSF1-212ENST00000616140 SAA4P35542 130 aa11.3□□□□□ -0.6
CPSF1-212ENST00000616140 GATA4P43694 442 aa11.3□□□□□ -0.6
CPSF1-212ENST00000616140 ZNF876PQ49A33 203 aa11.3□□□□□ -0.6
CPSF1-212ENST00000616140 PRR30Q53SZ7 412 aaPredicted RBP11.3□□□□□ -0.6
CPSF1-212ENST00000616140 ZNF562Q6V9R5 426 aa11.3□□□□□ -0.6
CPSF1-212ENST00000616140 MTURNQ8N3F0 131 aa11.3□□□□□ -0.6
CPSF1-212ENST00000616140 TMEM158Q8WZ71 300 aa11.3□□□□□ -0.6
CPSF1-212ENST00000616140 PLXNA2O75051 1894 aa11.3□□□□□ -0.6
CPSF1-212ENST00000616140 IGHV2-5P01817 119 aa11.3□□□□□ -0.6
CPSF1-212ENST00000616140 C17orf58Q2M2W7 97 aa11.3□□□□□ -0.6
CPSF1-212ENST00000616140 LINC01559Q495D7 138 aa11.3□□□□□ -0.6
CPSF1-212ENST00000616140 POLR3KQ9Y2Y1 108 aaPredicted RBP11.3□□□□□ -0.6
CPSF1-212ENST00000616140 TRGV11A0A075B6L2 103 aa11.29□□□□□ -0.6
CPSF1-212ENST00000616140 TRAV12-3A0A0B4J271 114 aa11.29□□□□□ -0.6
CPSF1-212ENST00000616140 WT1-ASQ06250 92 aa11.29□□□□□ -0.6
CPSF1-212ENST00000616140 TDGF1P13385 188 aa11.29□□□□□ -0.6
CPSF1-212ENST00000616140 ABCA2Q9BZC7 2435 aa11.29□□□□□ -0.6
CPSF1-212ENST00000616140 C10orf126Q8N4M7 172 aa11.29□□□□□ -0.6
CPSF1-212ENST00000616140 YAE1D1Q9NRH1 226 aa11.29□□□□□ -0.6
CPSF1-212ENST00000616140 GOLGB1Q14789 3259 aaKnown RBP11.29□□□□□ -0.6
CPSF1-212ENST00000616140 DENND4CQ5VZ89 1909 aa11.28□□□□□ -0.6
CPSF1-212ENST00000616140 TRBV7-1A0A0A6YYK4 115 aa11.28□□□□□ -0.6
CPSF1-212ENST00000616140 C15orf65H3BRN8 121 aa11.28□□□□□ -0.6
CPSF1-212ENST00000616140 IGHV4-39P01824 125 aa11.28□□□□□ -0.6
CPSF1-212ENST00000616140 RIPPLY3P57055 190 aa11.28□□□□□ -0.6
CPSF1-212ENST00000616140 PDE6HQ13956 83 aa11.28□□□□□ -0.6
CPSF1-212ENST00000616140 SLC25A2Q9BXI2 301 aa11.28□□□□□ -0.6
CPSF1-212ENST00000616140 DPH3P1Q9H4G8 78 aa11.28□□□□□ -0.6
CPSF1-212ENST00000616140 LINC00477Q96M19 166 aa11.28□□□□□ -0.6
CPSF1-212ENST00000616140 DOPEY1Q5JWR5 2465 aa11.28□□□□□ -0.6
CPSF1-212ENST00000616140 TMEM213A2RRL7 107 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms