RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 MRAPQ8TCY5 172 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 ZMAT5Q9UDW3 170 aaKnown RBP11.24□□□□□ -0.61
TRIM28-207ENST00000597136 SMAD5-AS1Q9Y6J3 95 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 A0A1B0GV50 99 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 OR10J4P0C629 311 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 GCHFRP30047 84 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 GALR1P47211 349 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 RAB14P61106 215 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 LCN12Q6JVE5 192 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 TCF24Q7RTU0 167 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 Q8N1Y9 231 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 FXYD5Q96DB9 178 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 TMPRSS5Q9H3S3 457 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 HELTA6NFD8 242 aa11.23□□□□□ -0.61
TRIM28-207ENST00000597136 H3BQ15 152 aa11.23□□□□□ -0.61
TRIM28-207ENST00000597136 TEX46H3BTG2 121 aa11.23□□□□□ -0.61
TRIM28-207ENST00000597136 HBE1P02100 147 aa11.23□□□□□ -0.61
TRIM28-207ENST00000597136 SNRPCP09234 159 aaKnown RBP11.23□□□□□ -0.61
TRIM28-207ENST00000597136 IGLC2P0DOY2 106 aa11.23□□□□□ -0.61
TRIM28-207ENST00000597136 CCL20P78556 96 aa11.23□□□□□ -0.61
TRIM28-207ENST00000597136 GUCA2BQ16661 112 aa11.23□□□□□ -0.61
TRIM28-207ENST00000597136 FAM90A2PQ658T7 463 aa11.23□□□□□ -0.61
TRIM28-207ENST00000597136 OR2K2Q8NGT1 345 aa11.23□□□□□ -0.61
TRIM28-207ENST00000597136 C17orf77Q96MU5 243 aa11.23□□□□□ -0.61
TRIM28-207ENST00000597136 HRH4Q9H3N8 390 aa11.23□□□□□ -0.61
TRIM28-207ENST00000597136 CD5P06127 495 aa11.22□□□□□ -0.61
TRIM28-207ENST00000597136 HIST1H1EP10412 219 aaKnown RBP11.22□□□□□ -0.61
TRIM28-207ENST00000597136 ATF4P18848 351 aaPredicted RBP11.22□□□□□ -0.61
TRIM28-207ENST00000597136 RPL11P62913 178 aaKnown RBP11.22□□□□□ -0.61
TRIM28-207ENST00000597136 UBE2L3P68036 154 aaKnown RBP11.22□□□□□ -0.61
TRIM28-207ENST00000597136 CLLU1Q5K131 121 aa11.22□□□□□ -0.61
TRIM28-207ENST00000597136 IQCF2Q8IXL9 164 aa11.22□□□□□ -0.61
TRIM28-207ENST00000597136 SUN5Q8TC36 379 aa11.22□□□□□ -0.61
TRIM28-207ENST00000597136 IGKV3-7A0A075B6H7 116 aa11.21□□□□□ -0.61
TRIM28-207ENST00000597136 A0A087X0K7 114 aa11.21□□□□□ -0.61
TRIM28-207ENST00000597136 CD7P09564 240 aa11.21□□□□□ -0.61
TRIM28-207ENST00000597136 NBEAP1P0C6P0 100 aa11.21□□□□□ -0.61
TRIM28-207ENST00000597136 TMEM167BQ9NRX6 74 aa11.21□□□□□ -0.61
TRIM28-207ENST00000597136 ZNF586Q9NXT0 402 aa11.21□□□□□ -0.61
TRIM28-207ENST00000597136 TENM3Q9P273 2699 aa11.21□□□□□ -0.62
TRIM28-207ENST00000597136 TRBV19A0A075B6N1 114 aa11.2□□□□□ -0.62
TRIM28-207ENST00000597136 H3BTX0 84 aa11.2□□□□□ -0.62
TRIM28-207ENST00000597136 GUK1Q16774 197 aa11.2□□□□□ -0.62
TRIM28-207ENST00000597136 RBPMS2Q6ZRY4 209 aaKnown RBP11.2□□□□□ -0.62
TRIM28-207ENST00000597136 BLNKQ8WV28 456 aa11.2□□□□□ -0.62
TRIM28-207ENST00000597136 PSMB3P49720 205 aa11.2□□□□□ -0.62
TRIM28-207ENST00000597136 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.2□□□□□ -0.62
TRIM28-207ENST00000597136 GBGT1Q8N5D6 347 aa11.2□□□□□ -0.62
TRIM28-207ENST00000597136 WFDC10AQ9H1F0 79 aa11.2□□□□□ -0.62
TRIM28-207ENST00000597136 NRN1Q9NPD7 142 aa11.2□□□□□ -0.62
TRIM28-207ENST00000597136 TRAV25A0A0B4J276 109 aa11.19□□□□□ -0.62
TRIM28-207ENST00000597136 TSPAN4O14817 238 aa11.19□□□□□ -0.62
TRIM28-207ENST00000597136 NDUFB4O95168 129 aa11.19□□□□□ -0.62
TRIM28-207ENST00000597136 MEOX2P50222 304 aa11.19□□□□□ -0.62
TRIM28-207ENST00000597136 PMS2P11Q13670 270 aa11.19□□□□□ -0.62
TRIM28-207ENST00000597136 PDE6HQ13956 83 aa11.19□□□□□ -0.62
TRIM28-207ENST00000597136 MS4A6AQ9H2W1 248 aa11.19□□□□□ -0.62
TRIM28-207ENST00000597136 SLC17A3O00476 420 aa11.18□□□□□ -0.62
TRIM28-207ENST00000597136 TFPI2P48307 235 aa11.18□□□□□ -0.62
TRIM28-207ENST00000597136 CD81P60033 236 aa11.18□□□□□ -0.62
TRIM28-207ENST00000597136 DCANP1Q8TF63 244 aa11.18□□□□□ -0.62
TRIM28-207ENST00000597136 GNG13Q9P2W3 67 aa11.18□□□□□ -0.62
TRIM28-207ENST00000597136 ZNF253O75346 499 aa11.17□□□□□ -0.62
TRIM28-207ENST00000597136 PPT1P50897 306 aa11.17□□□□□ -0.62
TRIM28-207ENST00000597136 UBE2G2P60604 165 aa11.17□□□□□ -0.62
TRIM28-207ENST00000597136 RANP62826 216 aaKnown RBP11.17□□□□□ -0.62
TRIM28-207ENST00000597136 YTHDF2Q9Y5A9 579 aaKnown RBP11.17□□□□□ -0.62
TRIM28-207ENST00000597136 DNASE2O00115 360 aaPredicted RBP11.16□□□□□ -0.62
TRIM28-207ENST00000597136 SOCS3O14543 225 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 PAFAH1B2P68402 229 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 GTSCR1Q86UQ5 136 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 WFDC3Q8IUB2 231 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 MANBALQ9NQG1 85 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 ZNF331Q9NQX6 463 aaPredicted RBP11.16□□□□□ -0.62
TRIM28-207ENST00000597136 C19orf73Q9NVV2 129 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 DNAH9Q9NYC9 4486 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 A0A1W2PRE2 83 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 FAM74A7A6NL05 159 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 PAGE4O60829 102 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 LYPD1Q8N2G4 141 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 DEFB125Q8N687 156 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 SPAG8Q99932 426 aaPredicted RBP11.16□□□□□ -0.62
TRIM28-207ENST00000597136 SLC50A1Q9BRV3 221 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 ARL2-SNX15V9GYD0 113 aa11.16□□□□□ -0.62
TRIM28-207ENST00000597136 TRAV2A0A0B4J234 112 aa11.15□□□□□ -0.62
TRIM28-207ENST00000597136 TRAV8-2A0A0B4J237 113 aa11.15□□□□□ -0.62
TRIM28-207ENST00000597136 K7EQG2 157 aa11.15□□□□□ -0.62
TRIM28-207ENST00000597136 IFNA1P01562 189 aa11.15□□□□□ -0.62
TRIM28-207ENST00000597136 IGHV4-30-4P0DP06 118 aa11.15□□□□□ -0.62
TRIM28-207ENST00000597136 PSG9Q00887 426 aa11.15□□□□□ -0.62
TRIM28-207ENST00000597136 HAGHQ16775 308 aa11.15□□□□□ -0.62
TRIM28-207ENST00000597136 SAMD13Q5VXD3 122 aa11.15□□□□□ -0.62
TRIM28-207ENST00000597136 IGFL4Q6B9Z1 124 aa11.15□□□□□ -0.62
TRIM28-207ENST00000597136 EXOC3-AS1Q8N2X6 119 aa11.15□□□□□ -0.62
TRIM28-207ENST00000597136 C16orf92Q96LL3 132 aa11.15□□□□□ -0.62
TRIM28-207ENST00000597136 Q9H3A6 140 aa11.15□□□□□ -0.62
TRIM28-207ENST00000597136 RBFOX3A6NFN3 312 aa11.14□□□□□ -0.63
TRIM28-207ENST00000597136 OR11H12B2RN74 326 aa11.14□□□□□ -0.63
TRIM28-207ENST00000597136 GGTLC3B5MD39 225 aa11.14□□□□□ -0.63
TRIM28-207ENST00000597136 ISLRO14498 428 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms