RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PSG9Q00887 426 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 PLP2Q04941 152 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 FXYD3Q14802 87 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 TNXAQ16473 311 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 MPV17L2Q567V2 206 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 KLF17Q5JT82 389 aaPredicted RBP3.3□□□□□ -1.88
LIG3-211ENST00000588713 MUC21Q5SSG8 566 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 SPATA31B1PQ5VZV4 182 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 LCN12Q6JVE5 192 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 VHLLQ6RSH7 139 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 MIR17HGQ75NE6 70 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 WDR86Q86TI4 376 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 ATOH7Q8N100 152 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 FAM19A2Q8N3H0 131 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.3□□□□□ -1.88
LIG3-211ENST00000588713 OR4A16Q8NH70 328 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 OR4S2Q8NH73 311 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 NEU4Q8WWR8 484 aaPredicted RBP3.3□□□□□ -1.88
LIG3-211ENST00000588713 TNFRSF14Q92956 283 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 ZNF488Q96MN9 340 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 ZNF714Q96N38 554 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 RNASE7Q9H1E1 156 aaKnown RBP3.3□□□□□ -1.88
LIG3-211ENST00000588713 ZNF492Q9P255 531 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 DUSP13Q9UII6 198 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 HSPB8Q9UJY1 196 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 TCF19Q9Y242 345 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 WASHC3Q9Y3C0 194 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 WNK2Q9Y3S1 2297 aa3.3□□□□□ -1.88
LIG3-211ENST00000588713 TANC2Q9HCD6 1990 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 GAGE12BA1L429 117 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 FAM231BA6NCW3 169 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 LINC00473A8K010 186 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 IQCF6A8MYZ5 107 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 H3BRM9 83 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 H3BS24 57 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 CORTO00230 105 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 PEX7O00628 323 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 OR7C2O60412 319 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 MRPL33O75394 65 aaKnown RBP3.29□□□□□ -1.88
LIG3-211ENST00000588713 LEPROTL1O95214 131 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 CELA3BP08861 270 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 FRMD6-AS1P0C7T7 363 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 C8orf88P0DMB2 117 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 IGHV4-38-2P0DP08 117 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 COX8AP10176 69 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 MGST1P10620 155 aaKnown RBP3.29□□□□□ -1.88
LIG3-211ENST00000588713 BMI1P35226 326 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 GPR12P47775 334 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 MFAP2P55001 183 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 TCL1AP56279 114 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 RPS16P62249 146 aaKnown RBP3.29□□□□□ -1.88
LIG3-211ENST00000588713 UBE2L3P68036 154 aaKnown RBP3.29□□□□□ -1.88
LIG3-211ENST00000588713 PAX2Q02962 417 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 HSD52Q0P140 79 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 PSG5Q15238 335 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 POU2AF1Q16633 256 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 TBC1D28Q2M2D7 210 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 MAJINQ3KP22 176 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 TMEM30BQ3MIR4 351 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 KIAA1644Q3SXP7 199 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 SPINK9Q5DT21 86 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 LCE5AQ5TCM9 118 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 LINC01545Q5VT33 79 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 DUX4L9Q6RFH8 374 aaPredicted RBP3.29□□□□□ -1.88
LIG3-211ENST00000588713 C2orf91Q6ZV80 131 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 Q6ZVH6 145 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 SPATA12Q7Z6I5 190 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 BPIFA4PQ86YQ2 179 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 FER1L6-AS1Q8NA97 138 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 GATD1Q8NB37 220 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 NUP35Q8NFH5 326 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 Q8TCH9 128 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 ABHD3Q8WU67 409 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 SSMEM1Q8WWF3 244 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 H1FXQ92522 213 aaKnown RBP3.29□□□□□ -1.88
LIG3-211ENST00000588713 ADTRPQ96IZ2 230 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 NABP2Q9BQ15 211 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 MAP1LC3CQ9BXW4 147 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 GFRA4Q9GZZ7 299 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 MEGF9Q9H1U4 602 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 RAB9BQ9NP90 201 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 DYNLRB1Q9NP97 96 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 ENY2Q9NPA8 101 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 HEYLQ9NQ87 328 aaPredicted RBP3.29□□□□□ -1.88
LIG3-211ENST00000588713 TMEM14BQ9NUH8 114 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 TMEM140Q9NV12 185 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 SMPXQ9UHP9 88 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 ZNF257Q9Y2Q1 563 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 OR51B2Q9Y5P1 312 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 MUC4Q99102 2169 aa3.29□□□□□ -1.88
LIG3-211ENST00000588713 C7orf71A4D174 169 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 PSMB11A5LHX3 300 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 C9orf118A6NHY6 69 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 B9A039 149 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 INS-IGF2F8WCM5 200 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 C15orf65H3BRN8 121 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 SIVA1O15304 175 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 SPINT2O43291 252 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 NUDT3O95989 172 aa3.28□□□□□ -1.88
LIG3-211ENST00000588713 CCNOP22674 350 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms