RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 FAM231BA6NCW3 169 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 ERCC8Q13216 396 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 FAM231DQ6ZW35 169 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 TRGV11A0A075B6L2 103 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 CFHR2P36980 270 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 SLAQ13239 276 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 TMEM158Q8WZ71 300 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 TMEM262E9PQX1 116 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 MMP23AO75900 390 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 DNAL4O96015 105 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 RNASE1P07998 156 aaKnown RBP12.35□□□□□ -0.43
CIITA-204ENST00000570546 OR13C6PQ8NH95 151 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 FER1L5A0AVI2 2057 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 WT1-ASQ06250 92 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 C8orf49Q96NF6 230 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 SPOCK3Q9BQ16 436 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 VWC2Q2TAL6 325 aa12.35□□□□□ -0.43
CIITA-204ENST00000570546 PRTN3P24158 256 aa12.34□□□□□ -0.43
CIITA-204ENST00000570546 SCGB1A1P11684 91 aa12.34□□□□□ -0.43
CIITA-204ENST00000570546 LINC00477Q96M19 166 aa12.34□□□□□ -0.43
CIITA-204ENST00000570546 TRAV2A0A0B4J234 112 aa12.34□□□□□ -0.43
CIITA-204ENST00000570546 LINC01549A6NIU2 74 aa12.34□□□□□ -0.43
CIITA-204ENST00000570546 DPH3P1Q9H4G8 78 aa12.34□□□□□ -0.43
CIITA-204ENST00000570546 ICE1Q9Y2F5 2266 aa12.34□□□□□ -0.43
CIITA-204ENST00000570546 KIF26AQ9ULI4 1882 aaPredicted RBP12.34□□□□□ -0.43
CIITA-204ENST00000570546 TRBV19A0A075B6N1 114 aa12.34□□□□□ -0.43
CIITA-204ENST00000570546 CD28P10747 220 aa12.34□□□□□ -0.43
CIITA-204ENST00000570546 PLNP26678 52 aa12.34□□□□□ -0.43
CIITA-204ENST00000570546 LOXP28300 417 aaPredicted RBP12.34□□□□□ -0.43
CIITA-204ENST00000570546 KLF2Q9Y5W3 355 aaPredicted RBP12.34□□□□□ -0.43
CIITA-204ENST00000570546 TMEM213A2RRL7 107 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 PI4KAP42356 2102 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 C11orf53Q8IXP5 236 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 LINC00311Q8N616 119 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 TPSG1Q9NRR2 321 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 IGLV3-9A0A075B6K5 115 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 K7EN84 100 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 A0A1W2PRX2 142 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 TSPAN13O95857 204 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 PRR20EP86478 221 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 PRR20CP86479 221 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 PRR20DP86480 221 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 PRR20BP86481 221 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 PRR20AP86496 221 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 COX11Q9Y6N1 276 aa12.33□□□□□ -0.44
CIITA-204ENST00000570546 SRRM4A7MD48 611 aaKnown RBP12.32□□□□□ -0.44
CIITA-204ENST00000570546 CEACAM8P31997 349 aaPredicted RBP12.32□□□□□ -0.44
CIITA-204ENST00000570546 IGFL3Q6UXB1 125 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 ZNF562Q6V9R5 426 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 BRD3OSQ6XYD6 125 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 IGKV3D-20A0A0C4DH25 116 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 FAM223BA6NKX1 122 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 IGHV4-39P01824 125 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 PF4P02776 101 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 KIR3DS1Q14943 382 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 TMEM249Q2WGJ8 235 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 FAM223AQ8IWN6 122 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 CD5LO43866 347 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 GAGE13Q4V321 117 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 PLA2G2CQ5R387 149 aa12.32□□□□□ -0.44
CIITA-204ENST00000570546 RNF182Q8N6D2 247 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 IGHV3-64A0A075B6Q5 118 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 PRSS46E5RG02 174 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 IGLC2P0DOY2 106 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 IGLC3P0DOY3 106 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 DIAPH2-AS1Q14236 149 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 PRR30Q53SZ7 412 aaPredicted RBP12.31□□□□□ -0.44
CIITA-204ENST00000570546 DTX1Q86Y01 620 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 STHQ8IWL8 128 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 C14orf178Q8N769 122 aaPredicted RBP12.31□□□□□ -0.44
CIITA-204ENST00000570546 THAP8Q8NA92 274 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 FXYD5Q96DB9 178 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 TNFRSF6BO95407 300 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 POU2AF1Q16633 256 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 ASPHD1Q5U4P2 390 aa12.31□□□□□ -0.44
CIITA-204ENST00000570546 TOMM7Q9P0U1 55 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 COL4A4P53420 1690 aaPredicted RBP12.3□□□□□ -0.44
CIITA-204ENST00000570546 DOCK8Q8NF50 2099 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 TRGV2A0A075B6R0 118 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 H3BUX3 64 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 NDUFB8O95169 186 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 SAA4P35542 130 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 CDPF1Q6NVV7 123 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 DEFB104AQ8WTQ1 72 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 TMEM14CQ9P0S9 112 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 TMEM8BA6NDV4 472 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 SSBP2P81877 361 aaPredicted RBP12.3□□□□□ -0.44
CIITA-204ENST00000570546 STPG4Q8N801 248 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 TRAV8-2A0A0B4J237 113 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 ZC2HC1BQ5TFG8 222 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 HEATR1Q9H583 2144 aaKnown RBP12.3□□□□□ -0.44
CIITA-204ENST00000570546 FAM104BQ5XKR9 115 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 FAM215AQ9Y5M1 114 aa12.3□□□□□ -0.44
CIITA-204ENST00000570546 KIAA1549LQ6ZVL6 1849 aa12.29□□□□□ -0.44
CIITA-204ENST00000570546 TRAV12-3A0A0B4J271 114 aa12.29□□□□□ -0.44
CIITA-204ENST00000570546 IGHV1-24A0A0C4DH33 117 aa12.29□□□□□ -0.44
CIITA-204ENST00000570546 OBSL1O75147 1896 aa12.29□□□□□ -0.44
CIITA-204ENST00000570546 CSTL1Q9H114 145 aa12.29□□□□□ -0.44
CIITA-204ENST00000570546 LSM4Q9Y4Z0 139 aaKnown RBP12.29□□□□□ -0.44
CIITA-204ENST00000570546 H3BRN7 92 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms