RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 FUT9Q9Y231 359 aa11.29□□□□□ -0.6
CDH3-205ENST00000566808 TGFBR1P36897 503 aa11.28□□□□□ -0.6
CDH3-205ENST00000566808 RPS19P39019 145 aaKnown RBP11.28□□□□□ -0.6
CDH3-205ENST00000566808 CCR6P51684 374 aa11.28□□□□□ -0.6
CDH3-205ENST00000566808 SMCO1Q147U7 214 aa11.28□□□□□ -0.6
CDH3-205ENST00000566808 STEAP1BQ6NZ63 245 aa11.28□□□□□ -0.6
CDH3-205ENST00000566808 WFDC10BQ8IUB3 73 aa11.28□□□□□ -0.6
CDH3-205ENST00000566808 OR4D10Q8NGI6 311 aa11.28□□□□□ -0.6
CDH3-205ENST00000566808 PYGO2Q9BRQ0 406 aa11.28□□□□□ -0.6
CDH3-205ENST00000566808 SHANK2-AS3Q9BTD1 123 aa11.28□□□□□ -0.6
CDH3-205ENST00000566808 CRYM-AS1A6NIL9 109 aa11.27□□□□□ -0.61
CDH3-205ENST00000566808 RAB11AP62491 216 aa11.27□□□□□ -0.61
CDH3-205ENST00000566808 MRPL23Q16540 153 aaKnown RBP11.27□□□□□ -0.61
CDH3-205ENST00000566808 NEGR1Q7Z3B1 354 aa11.27□□□□□ -0.61
CDH3-205ENST00000566808 ZNF680Q8NEM1 530 aa11.27□□□□□ -0.61
CDH3-205ENST00000566808 LRRC20Q8TCA0 184 aa11.27□□□□□ -0.61
CDH3-205ENST00000566808 RTBDNQ9BSG5 229 aaPredicted RBP11.27□□□□□ -0.61
CDH3-205ENST00000566808 TRGV1A0A0A0MS02 117 aa11.26□□□□□ -0.61
CDH3-205ENST00000566808 CRYGDP07320 174 aa11.26□□□□□ -0.61
CDH3-205ENST00000566808 PRB4P10163 310 aaPredicted RBP11.26□□□□□ -0.61
CDH3-205ENST00000566808 GATA2P23769 480 aaPredicted RBP11.26□□□□□ -0.61
CDH3-205ENST00000566808 CCDC190Q86UF4 302 aa11.26□□□□□ -0.61
CDH3-205ENST00000566808 PARD6GQ9BYG4 376 aaPredicted RBP11.26□□□□□ -0.61
CDH3-205ENST00000566808 COMMD3Q9UBI1 195 aa11.26□□□□□ -0.61
CDH3-205ENST00000566808 PRO0255Q9UI72 69 aa11.26□□□□□ -0.61
CDH3-205ENST00000566808 CXCL2P19875 107 aa11.25□□□□□ -0.61
CDH3-205ENST00000566808 RAP2BP61225 183 aa11.25□□□□□ -0.61
CDH3-205ENST00000566808 SURF2Q15527 256 aaPredicted RBP11.25□□□□□ -0.61
CDH3-205ENST00000566808 LRTM2Q8N967 370 aa11.25□□□□□ -0.61
CDH3-205ENST00000566808 C11orf72Q8NBR9 251 aa11.25□□□□□ -0.61
CDH3-205ENST00000566808 ST6GAL2Q96JF0 529 aa11.25□□□□□ -0.61
CDH3-205ENST00000566808 GSN-AS1Q9NRJ2 163 aa11.25□□□□□ -0.61
CDH3-205ENST00000566808 MTFP1Q9UDX5 166 aa11.25□□□□□ -0.61
CDH3-205ENST00000566808 RAB26Q9ULW5 256 aa11.25□□□□□ -0.61
CDH3-205ENST00000566808 HIGD1AQ9Y241 93 aa11.25□□□□□ -0.61
CDH3-205ENST00000566808 AKR1C4P17516 323 aa11.24□□□□□ -0.61
CDH3-205ENST00000566808 KRTAP10-4P60372 401 aaPredicted RBP11.24□□□□□ -0.61
CDH3-205ENST00000566808 SLAQ13239 276 aa11.24□□□□□ -0.61
CDH3-205ENST00000566808 TMEM182Q6ZP80 229 aaPredicted RBP11.24□□□□□ -0.61
CDH3-205ENST00000566808 OR52I2Q8NH67 350 aa11.24□□□□□ -0.61
CDH3-205ENST00000566808 TRAV12-3A0A0B4J271 114 aa11.23□□□□□ -0.61
CDH3-205ENST00000566808 A0A0B4J2A0 478 aa11.23□□□□□ -0.61
CDH3-205ENST00000566808 RAB3DO95716 219 aa11.23□□□□□ -0.61
CDH3-205ENST00000566808 CRYBA4P53673 196 aa11.23□□□□□ -0.61
CDH3-205ENST00000566808 TAS2R19P59542 299 aa11.23□□□□□ -0.61
CDH3-205ENST00000566808 NEDD8Q15843 81 aa11.23□□□□□ -0.61
CDH3-205ENST00000566808 LCN15Q6UWW0 184 aa11.23□□□□□ -0.61
CDH3-205ENST00000566808 TMEM229BQ8NBD8 167 aa11.23□□□□□ -0.61
CDH3-205ENST00000566808 ODF3Q96PU9 254 aa11.23□□□□□ -0.61
CDH3-205ENST00000566808 SLC50A1Q9BRV3 221 aa11.23□□□□□ -0.61
CDH3-205ENST00000566808 SHPKQ9UHJ6 478 aa11.23□□□□□ -0.61
CDH3-205ENST00000566808 PAIP2BQ9ULR5 123 aaKnown RBP11.23□□□□□ -0.61
CDH3-205ENST00000566808 PKHD1L1Q86WI1 4243 aa11.23□□□□□ -0.61
CDH3-205ENST00000566808 TRAV5A0A0B4J249 113 aa11.22□□□□□ -0.61
CDH3-205ENST00000566808 PRSS46E5RG02 174 aa11.22□□□□□ -0.61
CDH3-205ENST00000566808 J3KRW8 73 aa11.22□□□□□ -0.61
CDH3-205ENST00000566808 LEPP41159 167 aa11.22□□□□□ -0.61
CDH3-205ENST00000566808 AKR1C1Q04828 323 aa11.22□□□□□ -0.61
CDH3-205ENST00000566808 S100A7AQ86SG5 101 aa11.22□□□□□ -0.61
CDH3-205ENST00000566808 VGLL1Q99990 258 aa11.22□□□□□ -0.61
CDH3-205ENST00000566808 PRR13Q9NZ81 148 aa11.22□□□□□ -0.61
CDH3-205ENST00000566808 LRP2P98164 4655 aa11.21□□□□□ -0.61
CDH3-205ENST00000566808 SPINK4O60575 86 aa11.21□□□□□ -0.61
CDH3-205ENST00000566808 HYPMO75409 117 aa11.21□□□□□ -0.61
CDH3-205ENST00000566808 IAPPP10997 89 aa11.21□□□□□ -0.61
CDH3-205ENST00000566808 SRIP30626 198 aa11.21□□□□□ -0.61
CDH3-205ENST00000566808 C8orf49Q96NF6 230 aa11.21□□□□□ -0.61
CDH3-205ENST00000566808 ZNF331Q9NQX6 463 aaPredicted RBP11.21□□□□□ -0.61
CDH3-205ENST00000566808 HHLA3Q9XRX5 114 aa11.21□□□□□ -0.61
CDH3-205ENST00000566808 PMS2P5A8MQ11 134 aa11.2□□□□□ -0.62
CDH3-205ENST00000566808 HPGDSO60760 199 aa11.2□□□□□ -0.62
CDH3-205ENST00000566808 IGHV3-53P01767 116 aa11.2□□□□□ -0.62
CDH3-205ENST00000566808 TCL1AP56279 114 aa11.2□□□□□ -0.62
CDH3-205ENST00000566808 ACOT7LQ6ZUV0 252 aa11.2□□□□□ -0.62
CDH3-205ENST00000566808 SCXQ7RTU7 201 aa11.2□□□□□ -0.62
CDH3-205ENST00000566808 LYZL2Q7Z4W2 148 aa11.2□□□□□ -0.62
CDH3-205ENST00000566808 RNF24Q9Y225 148 aa11.2□□□□□ -0.62
CDH3-205ENST00000566808 RCL1Q9Y2P8 373 aaKnown RBP11.2□□□□□ -0.62
CDH3-205ENST00000566808 LINC00854A0A1B0GVQ3 168 aa11.19□□□□□ -0.62
CDH3-205ENST00000566808 RS1O15537 224 aa11.19□□□□□ -0.62
CDH3-205ENST00000566808 PRAF2O60831 178 aa11.19□□□□□ -0.62
CDH3-205ENST00000566808 IL5P05113 134 aa11.19□□□□□ -0.62
CDH3-205ENST00000566808 OR5G3P0C626 314 aa11.19□□□□□ -0.62
CDH3-205ENST00000566808 LINC00869P0C866 280 aa11.19□□□□□ -0.62
CDH3-205ENST00000566808 PLP1P60201 277 aa11.19□□□□□ -0.62
CDH3-205ENST00000566808 LSM3P62310 102 aaKnown RBP11.19□□□□□ -0.62
CDH3-205ENST00000566808 FAAP20Q6NZ36 180 aa11.19□□□□□ -0.62
CDH3-205ENST00000566808 CYP2G1PQ6ZSU1 146 aa11.19□□□□□ -0.62
CDH3-205ENST00000566808 ZNF431Q8TF32 576 aaPredicted RBP11.19□□□□□ -0.62
CDH3-205ENST00000566808 PCNPQ8WW12 178 aaKnown RBP11.19□□□□□ -0.62
CDH3-205ENST00000566808 GPR132Q9UNW8 380 aa11.19□□□□□ -0.62
CDH3-205ENST00000566808 KCNIP3Q9Y2W7 256 aa11.19□□□□□ -0.62
CDH3-205ENST00000566808 PRAC2D3DTV9 90 aa11.18□□□□□ -0.62
CDH3-205ENST00000566808 K7EQD1 137 aa11.18□□□□□ -0.62
CDH3-205ENST00000566808 MRPS12O15235 138 aaKnown RBP11.18□□□□□ -0.62
CDH3-205ENST00000566808 RPP30P78346 268 aaKnown RBP11.18□□□□□ -0.62
CDH3-205ENST00000566808 ANXA2RQ3ZCQ2 193 aa11.18□□□□□ -0.62
CDH3-205ENST00000566808 IBA57Q5T440 356 aaKnown RBP11.18□□□□□ -0.62
CDH3-205ENST00000566808 TEPPQ6URK8 271 aa11.18□□□□□ -0.62
CDH3-205ENST00000566808 CIB3Q96Q77 187 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms