RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 RFESDQ8TAC1 157 aa10.64□□□□□ -0.71
CLK3-206ENST00000562078 RND1Q92730 232 aa10.64□□□□□ -0.71
CLK3-206ENST00000562078 SLC25A33Q9BSK2 321 aa10.64□□□□□ -0.71
CLK3-206ENST00000562078 PKDREJQ9NTG1 2253 aa10.64□□□□□ -0.71
CLK3-206ENST00000562078 ACACBO00763 2458 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 A0A096LNJ9 63 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 E9PLD3 99 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 CNIH1O95406 144 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 C8orf88P0DMB2 117 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 CSN1S1P47710 185 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 FHL3Q13643 280 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 ITLN1Q8WWA0 313 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 SRSF8Q9BRL6 282 aaKnown RBP10.63□□□□□ -0.71
CLK3-206ENST00000562078 SLC25A2Q9BXI2 301 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 MYOD1P15172 320 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 XGP55808 180 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 C3orf36Q3SXR2 165 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 FAM167A-AS1Q96KT0 104 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 VKORC1Q9BQB6 163 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 HIF1ANQ9NWT6 349 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 CYSLTR1Q9Y271 337 aa10.63□□□□□ -0.71
CLK3-206ENST00000562078 SMG1Q96Q15 3661 aaKnown RBP10.62□□□□□ -0.71
CLK3-206ENST00000562078 IGLV3-9A0A075B6K5 115 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 PROP1O75360 226 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 GAGE13Q4V321 117 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 OSR1Q8TAX0 266 aaPredicted RBP10.62□□□□□ -0.71
CLK3-206ENST00000562078 PRO0461Q9UI25 63 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 COL6A6A6NMZ7 2263 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 TCRBV4S1A1TA0A5B7 111 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 IGLL5B9A064 214 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 CD40P25942 277 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 GAGE5Q13069 117 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 GAGE6Q13070 117 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 PRSS3P2Q8NHM4 247 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 ANAPC13Q9BS18 74 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 SPXQ9BT56 116 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 HINT2Q9BX68 163 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 TMEM140Q9NV12 185 aa10.62□□□□□ -0.71
CLK3-206ENST00000562078 A0A1B0GWB2 263 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 NPIPB6E9PJ23 425 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 APOMO95445 188 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 MLANAQ16655 118 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 FAM201AQ5SY85 155 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 RBPMS2Q6ZRY4 209 aaKnown RBP10.61□□□□□ -0.71
CLK3-206ENST00000562078 ZNRF1Q8ND25 227 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 FAM110AQ9BQ89 295 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 CCL21O00585 134 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 SPINT2O43291 252 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 IFI27P40305 119 aaPredicted RBP10.61□□□□□ -0.71
CLK3-206ENST00000562078 LGALS9BQ3B8N2 356 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 LGALS9CQ6DKI2 356 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 Q6ZUT4 128 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 OR9G1Q8NH87 305 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 GLMPQ8WWB7 406 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 TM2D2Q9BX73 214 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 UFC1Q9Y3C8 167 aa10.61□□□□□ -0.71
CLK3-206ENST00000562078 C15orf65H3BRN8 121 aa10.6□□□□□ -0.71
CLK3-206ENST00000562078 P01737 135 aa10.6□□□□□ -0.71
CLK3-206ENST00000562078 CFHR2P36980 270 aa10.6□□□□□ -0.71
CLK3-206ENST00000562078 FAM90A1Q86YD7 464 aa10.6□□□□□ -0.71
CLK3-206ENST00000562078 SMIM20Q8N5G0 67 aa10.6□□□□□ -0.71
CLK3-206ENST00000562078 CHAC1Q9BUX1 264 aa10.6□□□□□ -0.71
CLK3-206ENST00000562078 PRSS22Q9GZN4 317 aa10.6□□□□□ -0.71
CLK3-206ENST00000562078 IGKV2D-26A0A0A0MRZ7 120 aa10.6□□□□□ -0.71
CLK3-206ENST00000562078 LOC389332A0A1B0GUA5 103 aa10.6□□□□□ -0.71
CLK3-206ENST00000562078 ERVK-16P61578 105 aa10.6□□□□□ -0.71
CLK3-206ENST00000562078 FOXI1Q12951 378 aa10.6□□□□□ -0.71
CLK3-206ENST00000562078 SOX21Q9Y651 276 aaPredicted RBP10.6□□□□□ -0.71
CLK3-206ENST00000562078 MOSP00540 346 aa10.59□□□□□ -0.71
CLK3-206ENST00000562078 IGHV1-46P01743 117 aa10.59□□□□□ -0.71
CLK3-206ENST00000562078 TNFAIP6P98066 277 aaPredicted RBP10.59□□□□□ -0.71
CLK3-206ENST00000562078 ZNF502Q8TBZ5 544 aa10.59□□□□□ -0.71
CLK3-206ENST00000562078 RALYQ9UKM9 306 aaKnown RBP10.59□□□□□ -0.71
CLK3-206ENST00000562078 NBASA2RRP1 2371 aa10.59□□□□□ -0.71
CLK3-206ENST00000562078 FAM90A9PA6NNJ1 464 aa10.59□□□□□ -0.71
CLK3-206ENST00000562078 KLRD1Q13241 179 aa10.59□□□□□ -0.71
CLK3-206ENST00000562078 GNG12Q9UBI6 72 aa10.59□□□□□ -0.71
CLK3-206ENST00000562078 DKK2Q9UBU2 259 aa10.59□□□□□ -0.71
CLK3-206ENST00000562078 TNCP24821 2201 aa10.58□□□□□ -0.72
CLK3-206ENST00000562078 LHBP01229 141 aa10.58□□□□□ -0.72
CLK3-206ENST00000562078 RPL39P5Q59GN2 51 aa10.58□□□□□ -0.72
CLK3-206ENST00000562078 DUX4L9Q6RFH8 374 aaPredicted RBP10.58□□□□□ -0.72
CLK3-206ENST00000562078 WFDC3Q8IUB2 231 aa10.58□□□□□ -0.72
CLK3-206ENST00000562078 PPP1R35Q8TAP8 253 aa10.58□□□□□ -0.72
CLK3-206ENST00000562078 ZNF414Q96IQ9 312 aa10.58□□□□□ -0.72
CLK3-206ENST00000562078 B9A039 149 aa10.58□□□□□ -0.72
CLK3-206ENST00000562078 RPL32P62910 135 aaKnown RBP10.58□□□□□ -0.72
CLK3-206ENST00000562078 NFE4Q86UQ8 179 aa10.58□□□□□ -0.72
CLK3-206ENST00000562078 PAXXQ9BUH6 204 aa10.58□□□□□ -0.72
CLK3-206ENST00000562078 C1QTNF4Q9BXJ3 329 aa10.58□□□□□ -0.72
CLK3-206ENST00000562078 FAM90A27PA6NNH2 459 aa10.57□□□□□ -0.72
CLK3-206ENST00000562078 SRRM4A7MD48 611 aaKnown RBP10.57□□□□□ -0.72
CLK3-206ENST00000562078 GATA4P43694 442 aa10.57□□□□□ -0.72
CLK3-206ENST00000562078 ANXA2RQ3ZCQ2 193 aa10.57□□□□□ -0.72
CLK3-206ENST00000562078 MLST8Q9BVC4 326 aa10.57□□□□□ -0.72
CLK3-206ENST00000562078 ENY2Q9NPA8 101 aa10.57□□□□□ -0.72
CLK3-206ENST00000562078 RNF7Q9UBF6 113 aa10.57□□□□□ -0.72
CLK3-206ENST00000562078 ARFGEF3Q5TH69 2177 aa10.57□□□□□ -0.72
CLK3-206ENST00000562078 C19orf71A6NCJ1 209 aa10.57□□□□□ -0.72
CLK3-206ENST00000562078 C15orf61A6NNL5 157 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms