RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 K7EN84 100 aa9.96□□□□□ -0.82
SHMT2-229ENST00000557348 K7ERU9 68 aa9.96□□□□□ -0.82
SHMT2-229ENST00000557348 APCSP02743 223 aa9.96□□□□□ -0.82
SHMT2-229ENST00000557348 OR5AL1P0C617 328 aa9.96□□□□□ -0.82
SHMT2-229ENST00000557348 HNF1AP20823 631 aa9.96□□□□□ -0.82
SHMT2-229ENST00000557348 DEFB113Q30KQ7 82 aa9.96□□□□□ -0.82
SHMT2-229ENST00000557348 TSKUQ8WUA8 353 aa9.96□□□□□ -0.82
SHMT2-229ENST00000557348 FAM167A-AS1Q96KT0 104 aa9.96□□□□□ -0.82
SHMT2-229ENST00000557348 ATP6V0BQ99437 205 aa9.96□□□□□ -0.82
SHMT2-229ENST00000557348 SLC25A2Q9BXI2 301 aa9.96□□□□□ -0.82
SHMT2-229ENST00000557348 HIF1ANQ9NWT6 349 aa9.96□□□□□ -0.82
SHMT2-229ENST00000557348 MRPL36Q9P0J6 103 aaKnown RBP9.96□□□□□ -0.82
SHMT2-229ENST00000557348 YTHDF2Q9Y5A9 579 aaKnown RBP9.96□□□□□ -0.82
SHMT2-229ENST00000557348 BMPR1BO00238 502 aa9.95□□□□□ -0.82
SHMT2-229ENST00000557348 GNG7O60262 68 aa9.95□□□□□ -0.82
SHMT2-229ENST00000557348 ORM2P19652 201 aa9.95□□□□□ -0.82
SHMT2-229ENST00000557348 TFPI2P48307 235 aa9.95□□□□□ -0.82
SHMT2-229ENST00000557348 CRIP2P52943 208 aaPredicted RBP9.95□□□□□ -0.82
SHMT2-229ENST00000557348 FAM120AOSQ5T036 256 aa9.95□□□□□ -0.82
SHMT2-229ENST00000557348 ASPHD1Q5U4P2 390 aa9.95□□□□□ -0.82
SHMT2-229ENST00000557348 PRSS57Q6UWY2 283 aa9.95□□□□□ -0.82
SHMT2-229ENST00000557348 OR8I2Q8N0Y5 310 aa9.95□□□□□ -0.82
SHMT2-229ENST00000557348 C5orf56Q8N8D9 126 aa9.95□□□□□ -0.82
SHMT2-229ENST00000557348 OR1B1Q8NGR6 318 aa9.95□□□□□ -0.82
SHMT2-229ENST00000557348 FAM103A1Q9BTL3 118 aaKnown RBP9.95□□□□□ -0.82
SHMT2-229ENST00000557348 MS4A6AQ9H2W1 248 aa9.95□□□□□ -0.82
SHMT2-229ENST00000557348 C21orf62Q9NYP8 219 aa9.95□□□□□ -0.82
SHMT2-229ENST00000557348 HSBP1O75506 76 aa9.94□□□□□ -0.82
SHMT2-229ENST00000557348 IGHV3-48P01763 117 aa9.94□□□□□ -0.82
SHMT2-229ENST00000557348 NDPQ00604 133 aa9.94□□□□□ -0.82
SHMT2-229ENST00000557348 MRPL54Q6P161 138 aaKnown RBP9.94□□□□□ -0.82
SHMT2-229ENST00000557348 PATE2Q6UY27 113 aa9.94□□□□□ -0.82
SHMT2-229ENST00000557348 OR4F17Q8NGA8 305 aa9.94□□□□□ -0.82
SHMT2-229ENST00000557348 CHCHD1Q96BP2 118 aaKnown RBP9.94□□□□□ -0.82
SHMT2-229ENST00000557348 MBD6Q96DN6 1003 aa9.94□□□□□ -0.82
SHMT2-229ENST00000557348 ZNF503Q96F45 646 aa9.94□□□□□ -0.82
SHMT2-229ENST00000557348 FANCD2OSQ96PS1 177 aa9.94□□□□□ -0.82
SHMT2-229ENST00000557348 CHTOPQ9Y3Y2 248 aaKnown RBP9.94□□□□□ -0.82
SHMT2-229ENST00000557348 SPTAN1Q13813 2472 aaKnown RBP9.94□□□□□ -0.82
SHMT2-229ENST00000557348 A0A096LNT2 108 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 IGKV1-17P01599 117 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 PSG1P11464 419 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 SRIP30626 198 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 UBE2G1P62253 170 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 UNQ5815/PRO19632Q6UWF5 114 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 TMUB1Q9BVT8 246 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 TMEM14CQ9P0S9 112 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 ARHGAP32A7KAX9 2087 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 EGR2P11161 476 aaPredicted RBP9.93□□□□□ -0.82
SHMT2-229ENST00000557348 LYZP61626 148 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 CENPWQ5EE01 88 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 IBA57Q5T440 356 aaKnown RBP9.93□□□□□ -0.82
SHMT2-229ENST00000557348 DEFB125Q8N687 156 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 C18orf32Q8TCD1 76 aa9.93□□□□□ -0.82
SHMT2-229ENST00000557348 COL12A1Q99715 3063 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 NAV3Q8IVL0 2385 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 USP9YO00507 2555 aaPredicted RBP9.92□□□□□ -0.82
SHMT2-229ENST00000557348 IGHV3-21A0A0B4J1V1 117 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 SLC17A3O00476 420 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 CD5LO43866 347 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 Q56UQ5 140 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 RUSC1-AS1Q66K80 236 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 TCF24Q7RTU0 167 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 TEX29Q8N6K0 151 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 DPF1Q92782 380 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 RNF125Q96EQ8 232 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 GRAMD2BQ96HH9 432 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 TMEM70Q9BUB7 260 aa9.92□□□□□ -0.82
SHMT2-229ENST00000557348 FAM181BA6NEQ2 426 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 PGPEP1LA6NFU8 196 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 HSBP1L1C9JCN9 74 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 H3BUA1 57 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 ATP6V0E1O15342 81 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 BRI3O95415 125 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 IGHV4-38-2P0DP08 117 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 CD33P20138 364 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 PSMG4Q5JS54 123 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 BRD3OSQ6XYD6 125 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 BPIFA4PQ86YQ2 179 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 NUDT10Q8NFP7 164 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 NRGNQ92686 78 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 FXYD5Q96DB9 178 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 SHANK2-AS3Q9BTD1 123 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 SLC25A39Q9BZJ4 359 aaPredicted RBP9.91□□□□□ -0.82
SHMT2-229ENST00000557348 TMEM191AQ9H0A3 160 aa9.91□□□□□ -0.82
SHMT2-229ENST00000557348 WI2-2373I1.2A0A1W2PRP0 233 aa9.9□□□□□ -0.82
SHMT2-229ENST00000557348 FAM231BA6NCW3 169 aa9.9□□□□□ -0.82
SHMT2-229ENST00000557348 FAM223BA6NKX1 122 aa9.9□□□□□ -0.82
SHMT2-229ENST00000557348 CRYBB3P26998 211 aa9.9□□□□□ -0.82
SHMT2-229ENST00000557348 RAB9AP51151 201 aa9.9□□□□□ -0.82
SHMT2-229ENST00000557348 VAMP3Q15836 100 aa9.9□□□□□ -0.82
SHMT2-229ENST00000557348 ECSCRQ19T08 205 aa9.9□□□□□ -0.82
SHMT2-229ENST00000557348 CT83Q5H943 113 aa9.9□□□□□ -0.82
SHMT2-229ENST00000557348 FAM223AQ8IWN6 122 aa9.9□□□□□ -0.82
SHMT2-229ENST00000557348 PSMG3-AS1Q96PY0 264 aa9.9□□□□□ -0.82
SHMT2-229ENST00000557348 ZNF580Q9UK33 172 aa9.9□□□□□ -0.82
SHMT2-229ENST00000557348 TRBV7-1A0A0A6YYK4 115 aa9.9□□□□□ -0.83
SHMT2-229ENST00000557348 TRAV5A0A0B4J249 113 aa9.9□□□□□ -0.83
SHMT2-229ENST00000557348 A6NDX4 124 aa9.9□□□□□ -0.83
SHMT2-229ENST00000557348 GGTLC3B5MD39 225 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms