RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 PDLIM4P50479 330 aa9.69□□□□□ -0.86
CCDC88C-211ENST00000556726 TMEM30BQ3MIR4 351 aa9.69□□□□□ -0.86
CCDC88C-211ENST00000556726 LINC00322Q6ZN03 302 aaPredicted RBP9.69□□□□□ -0.86
CCDC88C-211ENST00000556726 S100A7AQ86SG5 101 aa9.69□□□□□ -0.86
CCDC88C-211ENST00000556726 C21orf62Q9NYP8 219 aa9.69□□□□□ -0.86
CCDC88C-211ENST00000556726 LINC00614P0C842 121 aa9.69□□□□□ -0.86
CCDC88C-211ENST00000556726 OR10J3Q5JRS4 329 aa9.69□□□□□ -0.86
CCDC88C-211ENST00000556726 Q71RC1 249 aaPredicted RBP9.69□□□□□ -0.86
CCDC88C-211ENST00000556726 RELNP78509 3460 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 SHISA9B4DS77 424 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 S100A4P26447 101 aaKnown RBP9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 HLA-DMBP28068 263 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 TCF15Q12870 199 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 CLEC19AQ6UXS0 136 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 TMEM75Q8N9X5 138 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 C8orf49Q96NF6 230 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 EVI2AP22794 236 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 Q0VG73 95 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 ARPC1AQ92747 370 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 FMC1Q96HJ9 113 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 TMEM213A2RRL7 107 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 WFDC12Q8WWY7 111 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 VPS25Q9BRG1 176 aa9.68□□□□□ -0.86
CCDC88C-211ENST00000556726 FBLL1A6NHQ2 334 aaKnown RBP9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 IGLV2-8P01709 118 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 IGHV3-11P01762 117 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 LY96Q9Y6Y9 160 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 DSCAML1Q8TD84 2053 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 IGKV1D-37A0A075B6S9 117 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 CEACAM4O75871 244 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 CR1LQ2VPA4 569 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 GDF5OSQ5U4N7 250 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 SMIM15Q7Z3B0 74 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 STPG4Q8N801 248 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 Q8NA96 180 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 SMG1Q96Q15 3661 aaKnown RBP9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 SMIM27A0A1W2PRY6 76 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 NDPQ00604 133 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 SCGB2A2Q13296 93 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 FAM162BQ5T6X4 162 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 EBLN2Q6P2I7 272 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 BCL6BQ8N143 479 aaPredicted RBP9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 TRGV9Q99603 122 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 ALKBH7Q9BT30 221 aaPredicted RBP9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 OTORQ9NRC9 128 aa9.67□□□□□ -0.86
CCDC88C-211ENST00000556726 NAV2Q8IVL1 2488 aa9.66□□□□□ -0.86
CCDC88C-211ENST00000556726 A0A1B0GWJ7 208 aa9.66□□□□□ -0.86
CCDC88C-211ENST00000556726 MPV17L2Q567V2 206 aa9.66□□□□□ -0.86
CCDC88C-211ENST00000556726 SLC25A34Q6PIV7 304 aa9.66□□□□□ -0.86
CCDC88C-211ENST00000556726 AMN1Q8IY45 258 aa9.66□□□□□ -0.86
CCDC88C-211ENST00000556726 A0A087X0K7 114 aa9.66□□□□□ -0.86
CCDC88C-211ENST00000556726 SPRY2O43597 315 aa9.66□□□□□ -0.86
CCDC88C-211ENST00000556726 IGLV2-23P01705 113 aa9.66□□□□□ -0.86
CCDC88C-211ENST00000556726 IGLC1P0CG04 106 aa9.66□□□□□ -0.86
CCDC88C-211ENST00000556726 IGLL1P15814 213 aa9.66□□□□□ -0.86
CCDC88C-211ENST00000556726 LINC00310P59036 64 aa9.66□□□□□ -0.86
CCDC88C-211ENST00000556726 GLMPQ8WWB7 406 aa9.66□□□□□ -0.86
CCDC88C-211ENST00000556726 TRAV9-2A0A087WT02 112 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 HTN1P15515 57 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 TMEM249Q2WGJ8 235 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 LYZL1Q6UWQ5 148 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 Q86TA4 180 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 IGF2BP2-AS1Q96M15 143 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 VKORC1Q9BQB6 163 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 PPP1R14DQ9NXH3 145 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 ABCA12Q86UK0 2595 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 DLEU1O43261 78 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 RNF182Q8N6D2 247 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 ZNF738Q8NE65 137 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 PRELID3AQ96N28 172 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 RABAC1Q9UI14 185 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 HSPB8Q9UJY1 196 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 NACAE9PAV3 2078 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 D6R8Y8 96 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 ERCC8Q13216 396 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 BRD3OSQ6XYD6 125 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 ZC2HC1AQ96GY0 325 aa9.65□□□□□ -0.86
CCDC88C-211ENST00000556726 FNDC10F2Z333 226 aa9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 IGLC2P0DOY2 106 aa9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 IGLC3P0DOY3 106 aa9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 SRD5A1P18405 259 aa9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 GTSF1Q8WW33 167 aa9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 G3V318 75 aa9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 FCN3O75636 299 aa9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 NDUFB8O95169 186 aa9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 IGKV3-20P01619 116 aa9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 TSPOP30536 169 aa9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 VMO1Q7Z5L0 202 aa9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 RPL7P18124 248 aaKnown RBP9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 TEX43Q6ZNM6 134 aa9.64□□□□□ -0.87
CCDC88C-211ENST00000556726 TOMM40O96008 361 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 IGKV1-17P01599 117 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 IFI27P40305 119 aaPredicted RBP9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 C15orf32Q32M92 178 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 SPANXN1Q5VSR9 72 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 CCDC144NLQ6NUI1 221 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 OR10AG1Q8NH19 301 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 C20orf144Q9BQM9 153 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 KIR2DL5BA0A0G2JN68 375 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 KIR2DL5BA0A0G2JPC4 375 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms