RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 PKDREJQ9NTG1 2253 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 OR4C46A6NHA9 309 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 RPL7P18124 248 aaKnown RBP10.59□□□□□ -0.71
SHMT2-222ENST00000555774 KLRB1Q12918 225 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 ZNF493Q6ZR52 646 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 SPATA12Q7Z6I5 190 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 MAP1LC3CQ9BXW4 147 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 PLXNB1O43157 2135 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 AKAP13Q12802 2813 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 ANKRD11Q6UB99 2663 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-222ENST00000555774 ROS1P08922 2347 aa10.59□□□□□ -0.71
SHMT2-222ENST00000555774 F8W735 103 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-222ENST00000555774 M0QZ24 198 aa10.58□□□□□ -0.72
SHMT2-222ENST00000555774 ARMS2P0C7Q2 107 aa10.58□□□□□ -0.72
SHMT2-222ENST00000555774 ADORA2A-AS1P86434 159 aa10.58□□□□□ -0.72
SHMT2-222ENST00000555774 CD24P25063 80 aa10.58□□□□□ -0.72
SHMT2-222ENST00000555774 CRIP1P50238 77 aa10.58□□□□□ -0.72
SHMT2-222ENST00000555774 KLF17Q5JT82 389 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-222ENST00000555774 SAPCD1Q5SSQ6 148 aa10.58□□□□□ -0.72
SHMT2-222ENST00000555774 VMO1Q7Z5L0 202 aa10.58□□□□□ -0.72
SHMT2-222ENST00000555774 STPG4Q8N801 248 aa10.58□□□□□ -0.72
SHMT2-222ENST00000555774 MSRB2Q9Y3D2 182 aa10.58□□□□□ -0.72
SHMT2-222ENST00000555774 CEP250Q9BV73 2442 aa10.57□□□□□ -0.72
SHMT2-222ENST00000555774 Q71RC1 249 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-222ENST00000555774 MGAQ8IWI9 3026 aa10.57□□□□□ -0.72
SHMT2-222ENST00000555774 LY6HO94772 140 aa10.57□□□□□ -0.72
SHMT2-222ENST00000555774 M0R3E3 92 aa10.56□□□□□ -0.72
SHMT2-222ENST00000555774 NDPQ00604 133 aa10.56□□□□□ -0.72
SHMT2-222ENST00000555774 PRR31Q5SQ13 230 aa10.56□□□□□ -0.72
SHMT2-222ENST00000555774 DTX2Q86UW9 622 aa10.56□□□□□ -0.72
SHMT2-222ENST00000555774 TMEM189A5PLL7 270 aa10.56□□□□□ -0.72
SHMT2-222ENST00000555774 HSBP1L1C9JCN9 74 aa10.56□□□□□ -0.72
SHMT2-222ENST00000555774 TFPI2P48307 235 aa10.56□□□□□ -0.72
SHMT2-222ENST00000555774 RPS20P60866 119 aaKnown RBP10.56□□□□□ -0.72
SHMT2-222ENST00000555774 ORAOV1Q8WV07 137 aa10.56□□□□□ -0.72
SHMT2-222ENST00000555774 TMUB1Q9BVT8 246 aa10.56□□□□□ -0.72
SHMT2-222ENST00000555774 AP5S1Q9NUS5 200 aa10.56□□□□□ -0.72
SHMT2-222ENST00000555774 ACACAQ13085 2346 aa10.56□□□□□ -0.72
SHMT2-222ENST00000555774 NCBP2LA6PVI3 153 aaKnown RBP10.55□□□□□ -0.72
SHMT2-222ENST00000555774 NDUFB8O95169 186 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 NPSP0C0P6 89 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 TMEM11P17152 192 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 KLK9Q2XQG4 91 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 FBLN7Q53RD9 439 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 C8orf49Q96NF6 230 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 MS4A6AQ9H2W1 248 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 RABAC1Q9UI14 185 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 KLK9Q9UKQ9 250 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 SH2D1AO60880 128 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 SRSF2Q01130 221 aaKnown RBP10.55□□□□□ -0.72
SHMT2-222ENST00000555774 LINC00173Q6ZV60 143 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 FA2HQ7L5A8 372 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 S4R3C0 116 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 U3KQK5 164 aa10.55□□□□□ -0.72
SHMT2-222ENST00000555774 CDSNQ15517 529 aa10.54□□□□□ -0.72
SHMT2-222ENST00000555774 DYNAPQ8N1N2 210 aa10.54□□□□□ -0.72
SHMT2-222ENST00000555774 A0A1W2PRD5 423 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 A0A1W2PRF3 423 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 A0A1W2PRM7 423 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 APC2O95996 2303 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 BMI1P35226 326 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 HINT1P49773 126 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-222ENST00000555774 RAB9AP51151 201 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 LINC01545Q5VT33 79 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 BCL6BQ8N143 479 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-222ENST00000555774 OR10AG1Q8NH19 301 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 IGHV7-81A0A0B4J1V7 117 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 CTSGP08311 255 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 FAM106CPP0CH98 169 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 EGR2P11161 476 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-222ENST00000555774 PRSS3P2Q8NHM4 247 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 FAM110DQ8TAY7 271 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-222ENST00000555774 PRR25Q96S07 402 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 SIRPDQ9H106 197 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 ZFHX2Q9C0A1 2572 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-222ENST00000555774 PCNX1Q96RV3 2341 aa10.53□□□□□ -0.72
SHMT2-222ENST00000555774 ZNF138P52744 262 aa10.52□□□□□ -0.72
SHMT2-222ENST00000555774 RELQ04864 619 aaPredicted RBP10.52□□□□□ -0.72
SHMT2-222ENST00000555774 FAM104BQ5XKR9 115 aa10.52□□□□□ -0.72
SHMT2-222ENST00000555774 SLC25A34Q6PIV7 304 aa10.52□□□□□ -0.72
SHMT2-222ENST00000555774 LYZL1Q6UWQ5 148 aa10.52□□□□□ -0.72
SHMT2-222ENST00000555774 MAP1BP46821 2468 aaKnown RBP10.52□□□□□ -0.72
SHMT2-222ENST00000555774 GVINP1Q7Z2Y8 2422 aa10.52□□□□□ -0.73
SHMT2-222ENST00000555774 OR2T8A6NH00 312 aa10.52□□□□□ -0.73
SHMT2-222ENST00000555774 CSN3P07498 182 aa10.52□□□□□ -0.73
SHMT2-222ENST00000555774 Q8N9W7 124 aa10.52□□□□□ -0.73
SHMT2-222ENST00000555774 ASCL2Q99929 193 aa10.52□□□□□ -0.73
SHMT2-222ENST00000555774 ZNF747Q9BV97 191 aa10.52□□□□□ -0.73
SHMT2-222ENST00000555774 TPPP3Q9BW30 176 aa10.52□□□□□ -0.73
SHMT2-222ENST00000555774 SMG1Q96Q15 3661 aaKnown RBP10.52□□□□□ -0.73
SHMT2-222ENST00000555774 RIF1Q5UIP0 2472 aaKnown RBP10.51□□□□□ -0.73
SHMT2-222ENST00000555774 LAMA5O15230 3695 aa10.51□□□□□ -0.73
SHMT2-222ENST00000555774 A0A087X0K7 114 aa10.51□□□□□ -0.73
SHMT2-222ENST00000555774 SCRT2Q9NQ03 307 aa10.51□□□□□ -0.73
SHMT2-222ENST00000555774 IGKV2-40A0A087WW87 121 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-222ENST00000555774 hDV102S1A0JD36 115 aa10.51□□□□□ -0.73
SHMT2-222ENST00000555774 IGKV2D-40P01614 121 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-222ENST00000555774 ORMDL3Q8N138 153 aa10.51□□□□□ -0.73
SHMT2-222ENST00000555774 SMAD5-AS1Q9Y6J3 95 aa10.51□□□□□ -0.73
SHMT2-222ENST00000555774 COX11Q9Y6N1 276 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms