RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-222	ENST00000543744	TXN2	Q99757	166 aa		13.91	□□□□□ -0.18
PTPN6-222	ENST00000543744	TMUB1	Q9BVT8	246 aa		13.91	□□□□□ -0.18
PTPN6-222	ENST00000543744	WNK2	Q9Y3S1	2297 aa		13.91	□□□□□ -0.18
PTPN6-222	ENST00000543744		M0R3E3	92 aa		13.91	□□□□□ -0.18
PTPN6-222	ENST00000543744	NTF3	P20783	257 aa		13.91	□□□□□ -0.18
PTPN6-222	ENST00000543744	LBH	Q53QV2	105 aa	Predicted RBP	13.91	□□□□□ -0.18
PTPN6-222	ENST00000543744	C16orf54	Q6UWD8	224 aa		13.91	□□□□□ -0.18
PTPN6-222	ENST00000543744	ZNF785	A8K8V0	405 aa		13.9	□□□□□ -0.18
PTPN6-222	ENST00000543744	RPL7	P18124	248 aa	Known RBP	13.9	□□□□□ -0.18
PTPN6-222	ENST00000543744	PSG9	Q00887	426 aa		13.9	□□□□□ -0.18
PTPN6-222	ENST00000543744	NIT1	Q86X76	327 aa		13.9	□□□□□ -0.18
PTPN6-222	ENST00000543744	VAMP8	Q9BV40	100 aa		13.9	□□□□□ -0.18
PTPN6-222	ENST00000543744	HSBP1	O75506	76 aa		13.9	□□□□□ -0.18
PTPN6-222	ENST00000543744	PRB4	P10163	310 aa	Predicted RBP	13.9	□□□□□ -0.18
PTPN6-222	ENST00000543744	CSN1S1	P47710	185 aa		13.9	□□□□□ -0.18
PTPN6-222	ENST00000543744	UNQ5815/PRO19632	Q6UWF5	114 aa		13.9	□□□□□ -0.18
PTPN6-222	ENST00000543744	FAM110D	Q8TAY7	271 aa	Predicted RBP	13.9	□□□□□ -0.18
PTPN6-222	ENST00000543744	BORCS7	Q96B45	105 aa		13.9	□□□□□ -0.18
PTPN6-222	ENST00000543744	RABAC1	Q9UI14	185 aa		13.9	□□□□□ -0.18
PTPN6-222	ENST00000543744	OVOL3	O00110	214 aa		13.89	□□□□□ -0.19
PTPN6-222	ENST00000543744	ECSCR	Q19T08	205 aa		13.89	□□□□□ -0.19
PTPN6-222	ENST00000543744	PRR31	Q5SQ13	230 aa		13.89	□□□□□ -0.19
PTPN6-222	ENST00000543744		Q8N976	141 aa		13.89	□□□□□ -0.19
PTPN6-222	ENST00000543744	ASCL2	Q99929	193 aa		13.89	□□□□□ -0.19
PTPN6-222	ENST00000543744	C20orf144	Q9BQM9	153 aa		13.89	□□□□□ -0.19
PTPN6-222	ENST00000543744	ZMAT5	Q9UDW3	170 aa	Known RBP	13.89	□□□□□ -0.19
PTPN6-222	ENST00000543744	MED13L	Q71F56	2210 aa		13.88	□□□□□ -0.19
PTPN6-222	ENST00000543744	CHEK1	O14757	476 aa		13.88	□□□□□ -0.19
PTPN6-222	ENST00000543744	NPFF	O15130	113 aa		13.88	□□□□□ -0.19
PTPN6-222	ENST00000543744	FOXA3	P55318	350 aa	Predicted RBP	13.88	□□□□□ -0.19
PTPN6-222	ENST00000543744	RNASEK	Q6P5S7	137 aa	Known RBP	13.88	□□□□□ -0.19
PTPN6-222	ENST00000543744	PAM16	Q9Y3D7	125 aa		13.88	□□□□□ -0.19
PTPN6-222	ENST00000543744	HAX1	O00165	279 aa		13.88	□□□□□ -0.19
PTPN6-222	ENST00000543744	C15orf32	Q32M92	178 aa		13.88	□□□□□ -0.19
PTPN6-222	ENST00000543744	C2orf88	Q9BSF0	95 aa		13.88	□□□□□ -0.19
PTPN6-222	ENST00000543744	SERTM2	A0A1B0GWG4	89 aa		13.87	□□□□□ -0.19
PTPN6-222	ENST00000543744	ATP6V0E1	O15342	81 aa		13.87	□□□□□ -0.19
PTPN6-222	ENST00000543744	C3orf79	P0CE67	100 aa		13.87	□□□□□ -0.19
PTPN6-222	ENST00000543744	S100A7	P31151	101 aa		13.87	□□□□□ -0.19
PTPN6-222	ENST00000543744	PIP4P2	Q8N4L2	257 aa		13.87	□□□□□ -0.19
PTPN6-222	ENST00000543744	CENPVL3	A0A0U1RRI6	287 aa		13.86	□□□□□ -0.19
PTPN6-222	ENST00000543744		A0A1B0GV90	55 aa		13.86	□□□□□ -0.19
PTPN6-222	ENST00000543744	SH2D7	A6NKC9	451 aa	Predicted RBP	13.86	□□□□□ -0.19
PTPN6-222	ENST00000543744		M0R2Z0	102 aa		13.86	□□□□□ -0.19
PTPN6-222	ENST00000543744	IGHV4-39	P01824	125 aa		13.86	□□□□□ -0.19
PTPN6-222	ENST00000543744	APOH	P02749	345 aa	Predicted RBP	13.86	□□□□□ -0.19
PTPN6-222	ENST00000543744	CT45A10	P0DMU9	189 aa		13.86	□□□□□ -0.19
PTPN6-222	ENST00000543744	FAM162B	Q5T6X4	162 aa		13.86	□□□□□ -0.19
PTPN6-222	ENST00000543744	GPR183	P32249	361 aa		13.86	□□□□□ -0.19
PTPN6-222	ENST00000543744	CRIP1	P50238	77 aa		13.86	□□□□□ -0.19
PTPN6-222	ENST00000543744	RHOG	P84095	191 aa		13.86	□□□□□ -0.19
PTPN6-222	ENST00000543744	ZNF502	Q8TBZ5	544 aa		13.86	□□□□□ -0.19
PTPN6-222	ENST00000543744		A0A1B0GUT8	65 aa		13.85	□□□□□ -0.19
PTPN6-222	ENST00000543744	CSMD1	Q96PZ7	3565 aa		13.85	□□□□□ -0.19
PTPN6-222	ENST00000543744	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	13.85	□□□□□ -0.19
PTPN6-222	ENST00000543744	IGHV3-35	A0A0C4DH35	117 aa		13.85	□□□□□ -0.19
PTPN6-222	ENST00000543744	CLEC3B	P05452	202 aa		13.85	□□□□□ -0.19
PTPN6-222	ENST00000543744	KLK9	Q2XQG4	91 aa		13.85	□□□□□ -0.19
PTPN6-222	ENST00000543744	C8orf49	Q96NF6	230 aa		13.85	□□□□□ -0.19
PTPN6-222	ENST00000543744	MIEN1	Q9BRT3	115 aa		13.85	□□□□□ -0.19
PTPN6-222	ENST00000543744	ASH1L	Q9NR48	2969 aa	Known RBP	13.85	□□□□□ -0.19
PTPN6-222	ENST00000543744	KLK9	Q9UKQ9	250 aa		13.85	□□□□□ -0.19
PTPN6-222	ENST00000543744	IGHV3OR16-8	A0A075B7F1	116 aa		13.84	□□□□□ -0.19
PTPN6-222	ENST00000543744	RIG	Q13278	110 aa		13.84	□□□□□ -0.19
PTPN6-222	ENST00000543744	ZNF705A	Q6ZN79	300 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPN6-222	ENST00000543744	ARL6IP6	Q8N6S5	226 aa		13.84	□□□□□ -0.19
PTPN6-222	ENST00000543744	NDFIP1	Q9BT67	221 aa		13.84	□□□□□ -0.19
PTPN6-222	ENST00000543744	SMAD5-AS1	Q9Y6J3	95 aa		13.84	□□□□□ -0.19
PTPN6-222	ENST00000543744	SVEP1	Q4LDE5	3571 aa		13.83	□□□□□ -0.19
PTPN6-222	ENST00000543744	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744	FAM181B	A6NEQ2	426 aa		13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744	EREG	O14944	169 aa		13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744	LINC01548	A6NM66	108 aa		13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744		G3V318	75 aa		13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744		M0R143	59 aa		13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744	IGKV2D-40	P01614	121 aa	Predicted RBP	13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744	ARMS2	P0C7Q2	107 aa		13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744	SAPCD1	Q5SSQ6	148 aa		13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744		Q6AWC8	147 aa		13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744	LINC00469	Q8N7U9	141 aa		13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744	URB1-AS1	Q96HZ7	61 aa		13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744	AKAP6	Q13023	2319 aa		13.83	□□□□□ -0.2
PTPN6-222	ENST00000543744	FBLL1	A6NHQ2	334 aa	Known RBP	13.82	□□□□□ -0.2
PTPN6-222	ENST00000543744	SNHG12	Q9BXW3	62 aa		13.82	□□□□□ -0.2
PTPN6-222	ENST00000543744		A0A1B0GW15	77 aa		13.81	□□□□□ -0.2
PTPN6-222	ENST00000543744	GOSR1	O95249	250 aa		13.81	□□□□□ -0.2
PTPN6-222	ENST00000543744	REL	Q04864	619 aa	Predicted RBP	13.81	□□□□□ -0.2
PTPN6-222	ENST00000543744	PAX8	Q06710	450 aa		13.81	□□□□□ -0.2
PTPN6-222	ENST00000543744	C5orf56	Q8N8D9	126 aa		13.81	□□□□□ -0.2
PTPN6-222	ENST00000543744	CHCHD1	Q96BP2	118 aa	Known RBP	13.81	□□□□□ -0.2
PTPN6-222	ENST00000543744	TPPP3	Q9BW30	176 aa		13.81	□□□□□ -0.2
PTPN6-222	ENST00000543744	RAB9A	P51151	201 aa		13.81	□□□□□ -0.2
PTPN6-222	ENST00000543744	PIMREG	Q9BSJ6	248 aa		13.81	□□□□□ -0.2
PTPN6-222	ENST00000543744	ZFAND3	Q9H8U3	227 aa		13.81	□□□□□ -0.2
PTPN6-222	ENST00000543744	PKD1L2	Q7Z442	2459 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	IGHV3OR16-10	A0A075B7F0	116 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744		M0QZ24	198 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	RAB4A	P20338	218 aa		13.8	□□□□□ -0.2
PTPN6-222	ENST00000543744	SPATA45	Q537H7	98 aa		13.8	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 53 ms