RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 GZMBP10144 247 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 LENEPQ9Y5L5 61 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 PIEZO1Q92508 2521 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 H3BRN7 92 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 RNASE2P10153 161 aaKnown RBP6.34□□□□□ -1.39
VPS13D-211ENST00000543710 GNG5P63218 68 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 ERCC8Q13216 396 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 SRSF6Q13247 344 aaKnown RBP6.34□□□□□ -1.39
VPS13D-211ENST00000543710 RNF144BQ7Z419 303 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 LIME1Q9H400 295 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 GVINP1Q7Z2Y8 2422 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 A0A0G2JMM0 328 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 A0A1W2PPB8 328 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 KIR3DP1A8MWS1 328 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 IGLV3-1P01715 115 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 APELAP0DMC3 54 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 PRTN3P24158 256 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 CCL18P55774 89 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 HGFACQ04756 655 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 PRR31Q5SQ13 230 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 C14orf144Q96I85 54 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 TRGV4A0A0C4DH28 118 aa6.34□□□□□ -1.4
VPS13D-211ENST00000543710 IGKV1-5P01602 117 aa6.34□□□□□ -1.4
VPS13D-211ENST00000543710 IGKV3-15P01624 115 aa6.34□□□□□ -1.4
VPS13D-211ENST00000543710 SS18Q15532 418 aa6.34□□□□□ -1.4
VPS13D-211ENST00000543710 C5orf64Q2M2E5 130 aa6.34□□□□□ -1.4
VPS13D-211ENST00000543710 CD177Q8N6Q3 437 aa6.34□□□□□ -1.4
VPS13D-211ENST00000543710 LEAP2Q969E1 77 aa6.34□□□□□ -1.4
VPS13D-211ENST00000543710 RLFQ13129 1914 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 C9orf118A6NHY6 69 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 RNF224P0DH78 156 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 IGFBPL1Q8WX77 278 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 RCHY1Q96PM5 261 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 IGKV1-27A0A075B6S5 117 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 IGHV1-69DA0A0B4J2H0 117 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 C15orf62A8K5M9 175 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 PRSS47A8MTI9 375 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 IGHV1-69P01742 117 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 HLA-DRB4P13762 266 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 DAD1P61803 113 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 GAGE2BQ13066 116 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 SPXQ9BT56 116 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 HLA-DRB4X5D2U9 266 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 I3L3M4 83 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 K7EM74 188 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 ODF1Q14990 250 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 RHOHQ15669 191 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 AMN1Q8IY45 258 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 FNDC1Q4ZHG4 1894 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-211ENST00000543710 TRPM6Q9BX84 2022 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 MED14OSP0DP75 135 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 LYZL1Q6UWQ5 148 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 C1orf122Q6ZSJ8 110 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 LY6G5BQ8NDX9 201 aa6.33□□□□□ -1.4
VPS13D-211ENST00000543710 D6R8Y8 96 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 NDUFA4O00483 81 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 LOXL1Q08397 574 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-211ENST00000543710 SVILO95425 2214 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 IGKV1-12A0A0C4DH73 117 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 CGB1A6NKQ9 187 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 IGKV1D-12P01611 117 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 RPL15P61313 204 aaKnown RBP6.32□□□□□ -1.4
VPS13D-211ENST00000543710 C8orf86Q6ZUL3 223 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 NDUFA4L2Q9NRX3 87 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 ZNF106Q9H2Y7 1883 aaKnown RBP6.32□□□□□ -1.4
VPS13D-211ENST00000543710 VWC2LB2RUY7 222 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 CFHR2P36980 270 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 UBE2E1P51965 193 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 ATRAIDQ6UW56 229 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 Q6ZVH6 145 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 SIGLEC9Q9Y336 463 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 TRIP12Q14669 1992 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-211ENST00000543710 K7EP34 96 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 IGHG4P01861 327 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 SPATA25Q9BR10 227 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 TIMM21Q9BVV7 248 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 COL6A6A6NMZ7 2263 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 THADAQ6YHU6 1953 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 F8WEM9 126 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 LY6G6DO95868 133 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 PYY3Q5JQD4 70 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 MEGF9Q9H1U4 602 aa6.32□□□□□ -1.4
VPS13D-211ENST00000543710 A0A087WX48 190 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 TRAV13-2A0A0B4J235 113 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 IGHV4-39P01824 125 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 PFN1P07737 140 aaKnown RBP6.31□□□□□ -1.4
VPS13D-211ENST00000543710 MYCNOSP40205 109 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 PMVKQ15126 192 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 FNDC4Q9H6D8 234 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-211ENST00000543710 VSIRQ9H7M9 311 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 FOXA3P55318 350 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-211ENST00000543710 RPL32P62910 135 aaKnown RBP6.31□□□□□ -1.4
VPS13D-211ENST00000543710 MST1LQ2TV78 715 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 UBE2WQ96B02 151 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 C18orf15Q96N68 181 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 CKS1BP61024 79 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 FHL1Q13642 323 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 PTPRDP23468 1912 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 TRAV2A0A0B4J234 112 aa6.31□□□□□ -1.4
VPS13D-211ENST00000543710 INS-IGF2F8WCM5 200 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms