RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 IGLV2-11P01706 119 aa11.24□□□□□ -0.61
CLIP1-216ENST00000541410 C19orf54Q5BKX5 351 aa11.24□□□□□ -0.61
CLIP1-216ENST00000541410 SMAD5-AS1Q9Y6J3 95 aa11.24□□□□□ -0.61
CLIP1-216ENST00000541410 KMT2BQ9UMN6 2715 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-216ENST00000541410 XKRY2A2RUG3 117 aa11.24□□□□□ -0.61
CLIP1-216ENST00000541410 BMPR1BO00238 502 aa11.24□□□□□ -0.61
CLIP1-216ENST00000541410 IGHV4-31P0DP07 118 aa11.24□□□□□ -0.61
CLIP1-216ENST00000541410 GATA3P23771 443 aa11.24□□□□□ -0.61
CLIP1-216ENST00000541410 CDX1P47902 265 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-216ENST00000541410 FMC1Q96HJ9 113 aa11.24□□□□□ -0.61
CLIP1-216ENST00000541410 GATCO43716 136 aaKnown RBP11.23□□□□□ -0.61
CLIP1-216ENST00000541410 SCGB2A1O75556 95 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 LTAP01374 205 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 IGHG2P01859 326 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 PF4V1P10720 104 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 Q86TA4 180 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 BTF3L4Q96K17 158 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 SELENOKQ9Y6D0 94 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 CLPSL1A2RUU4 121 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 MEOX2P50222 304 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 RAB4BP61018 213 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 ITPR3Q14573 2671 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 HIST3H2BBQ8N257 126 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 TCEAL7Q9BRU2 100 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 MLST8Q9BVC4 326 aa11.23□□□□□ -0.61
CLIP1-216ENST00000541410 GRIFINA4D1Z8 144 aa11.22□□□□□ -0.61
CLIP1-216ENST00000541410 ZNF705FA8MVS1 300 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-216ENST00000541410 SNURFLB1AK76 121 aa11.22□□□□□ -0.61
CLIP1-216ENST00000541410 FABP4P15090 132 aa11.22□□□□□ -0.61
CLIP1-216ENST00000541410 C10orf99Q6UWK7 81 aa11.22□□□□□ -0.61
CLIP1-216ENST00000541410 TRBV7-1A0A0A6YYK4 115 aa11.21□□□□□ -0.61
CLIP1-216ENST00000541410 IGF1P05019 195 aa11.21□□□□□ -0.61
CLIP1-216ENST00000541410 RPL7P18124 248 aaKnown RBP11.21□□□□□ -0.61
CLIP1-216ENST00000541410 PPIFP30405 207 aaKnown RBP11.21□□□□□ -0.61
CLIP1-216ENST00000541410 LOXL1Q08397 574 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-216ENST00000541410 DUX5Q96PT3 197 aa11.21□□□□□ -0.61
CLIP1-216ENST00000541410 PITPNC1Q9UKF7 332 aa11.21□□□□□ -0.61
CLIP1-216ENST00000541410 IGKV2-40A0A087WW87 121 aaPredicted RBP11.21□□□□□ -0.62
CLIP1-216ENST00000541410 SMIM27A0A1W2PRY6 76 aa11.21□□□□□ -0.62
CLIP1-216ENST00000541410 DIRC3C9JPN6 131 aa11.21□□□□□ -0.62
CLIP1-216ENST00000541410 IGKV2D-40P01614 121 aaPredicted RBP11.21□□□□□ -0.62
CLIP1-216ENST00000541410 KIAA1644Q3SXP7 199 aa11.21□□□□□ -0.62
CLIP1-216ENST00000541410 TCF24Q7RTU0 167 aa11.21□□□□□ -0.62
CLIP1-216ENST00000541410 MRPL18Q9H0U6 180 aaKnown RBP11.21□□□□□ -0.62
CLIP1-216ENST00000541410 AAMDCQ9H7C9 122 aa11.21□□□□□ -0.62
CLIP1-216ENST00000541410 BUB3O43684 328 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 GZMBP10144 247 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 KLK9Q2XQG4 91 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 RNF182Q8N6D2 247 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 OR10D4PQ8NGN7 298 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 KLK9Q9UKQ9 250 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 ZNF785A8K8V0 405 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 ARL3P36405 182 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 UNQ9165/PRO28630Q6UXU0 137 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 IL17RELQ6ZVW7 336 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 S100A7AQ86SG5 101 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 KRTAP1-3Q8IUG1 177 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 MBD6Q96DN6 1003 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 C8orf49Q96NF6 230 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 BEX4Q9NWD9 120 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-216ENST00000541410 GAR1Q9NY12 217 aaKnown RBP11.2□□□□□ -0.62
CLIP1-216ENST00000541410 RNF24Q9Y225 148 aa11.2□□□□□ -0.62
CLIP1-216ENST00000541410 HIGD1CA8MV81 97 aa11.19□□□□□ -0.62
CLIP1-216ENST00000541410 PLA2G2AP14555 144 aa11.19□□□□□ -0.62
CLIP1-216ENST00000541410 S100A2P29034 98 aa11.19□□□□□ -0.62
CLIP1-216ENST00000541410 NUP35Q8NFH5 326 aa11.19□□□□□ -0.62
CLIP1-216ENST00000541410 ZC2HC1AQ96GY0 325 aa11.19□□□□□ -0.62
CLIP1-216ENST00000541410 NEU1Q99519 415 aa11.19□□□□□ -0.62
CLIP1-216ENST00000541410 NAT8BQ9UHF3 227 aa11.19□□□□□ -0.62
CLIP1-216ENST00000541410 PSG8Q9UQ74 426 aa11.19□□□□□ -0.62
CLIP1-216ENST00000541410 SMAD7O15105 426 aaKnown RBP11.19□□□□□ -0.62
CLIP1-216ENST00000541410 CRIP2P52943 208 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-216ENST00000541410 RPL19P84098 196 aaKnown RBP11.19□□□□□ -0.62
CLIP1-216ENST00000541410 FAM231DQ6ZW35 169 aa11.19□□□□□ -0.62
CLIP1-216ENST00000541410 WFDC11Q8NEX6 87 aa11.19□□□□□ -0.62
CLIP1-216ENST00000541410 ACANP16112 2415 aa11.19□□□□□ -0.62
CLIP1-216ENST00000541410 ITPR2Q14571 2701 aa11.19□□□□□ -0.62
CLIP1-216ENST00000541410 FLNAP21333 2647 aaKnown RBP11.18□□□□□ -0.62
CLIP1-216ENST00000541410 FAM223BA6NKX1 122 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 M0QZK8 103 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 P01737 135 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 PSG3Q16557 428 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 FAM223AQ8IWN6 122 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 TMEM183AQ8IXX5 376 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 LYPD1Q8N2G4 141 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 TMEM256Q8N2U0 113 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 Q8TAT8 98 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 DAZAP1Q96EP5 407 aaKnown RBP11.18□□□□□ -0.62
CLIP1-216ENST00000541410 GRAMD2BQ96HH9 432 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 IGHG4P01861 327 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 S100A8P05109 93 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 S100A9P06702 114 aaKnown RBP11.18□□□□□ -0.62
CLIP1-216ENST00000541410 CDPF1Q6NVV7 123 aa11.18□□□□□ -0.62
CLIP1-216ENST00000541410 IZUMO1RA6ND01 250 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 J3QLI3 93 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 NUPR1O60356 82 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 CAMPP49913 170 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 PDE6HQ13956 83 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 METTL26Q96S19 204 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 HIST1H2BLQ99880 126 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms