RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 TRAV8-6A0A0B4J262 113 aa11.38□□□□□ -0.59
COLCA1-204ENST00000540738 PRSS57Q6UWY2 283 aa11.38□□□□□ -0.59
COLCA1-204ENST00000540738 SPG11Q96JI7 2443 aa11.37□□□□□ -0.59
COLCA1-204ENST00000540738 MMP23AO75900 390 aa11.37□□□□□ -0.59
COLCA1-204ENST00000540738 CA1P00915 261 aaPredicted RBP11.37□□□□□ -0.59
COLCA1-204ENST00000540738 SRSF1Q07955 248 aaKnown RBP eCLIP11.37□□□□□ -0.59
COLCA1-204ENST00000540738 XCL2Q9UBD3 114 aa11.37□□□□□ -0.59
COLCA1-204ENST00000540738 PPIFP30405 207 aaKnown RBP11.37□□□□□ -0.59
COLCA1-204ENST00000540738 TMEM86BQ8N661 226 aa11.37□□□□□ -0.59
COLCA1-204ENST00000540738 C1orf147Q96MC9 270 aaPredicted RBP11.37□□□□□ -0.59
COLCA1-204ENST00000540738 C11orf53Q8IXP5 236 aa11.37□□□□□ -0.59
COLCA1-204ENST00000540738 TTC9CQ8N5M4 171 aa11.37□□□□□ -0.59
COLCA1-204ENST00000540738 PARD6GQ9BYG4 376 aaPredicted RBP11.37□□□□□ -0.59
COLCA1-204ENST00000540738 RNASE7Q9H1E1 156 aaKnown RBP11.36□□□□□ -0.59
COLCA1-204ENST00000540738 DENND4CQ5VZ89 1909 aa11.36□□□□□ -0.59
COLCA1-204ENST00000540738 RHODO00212 210 aa11.36□□□□□ -0.59
COLCA1-204ENST00000540738 TSKUQ8WUA8 353 aa11.36□□□□□ -0.59
COLCA1-204ENST00000540738 IGHV3-53P01767 116 aa11.36□□□□□ -0.59
COLCA1-204ENST00000540738 ST6GALNAC6Q969X2 333 aa11.36□□□□□ -0.59
COLCA1-204ENST00000540738 WFDC1Q9HC57 220 aa11.36□□□□□ -0.59
COLCA1-204ENST00000540738 F5H768 121 aa11.35□□□□□ -0.59
COLCA1-204ENST00000540738 RPL23P62829 140 aaKnown RBP11.35□□□□□ -0.59
COLCA1-204ENST00000540738 HIST1H4GQ99525 98 aa11.35□□□□□ -0.59
COLCA1-204ENST00000540738 TMEM160Q9NX00 188 aa11.35□□□□□ -0.59
COLCA1-204ENST00000540738 CD28P10747 220 aa11.35□□□□□ -0.59
COLCA1-204ENST00000540738 Q8NFD4 153 aa11.35□□□□□ -0.59
COLCA1-204ENST00000540738 C18orf15Q96N68 181 aa11.35□□□□□ -0.59
COLCA1-204ENST00000540738 PTPN13Q12923 2485 aa11.35□□□□□ -0.59
COLCA1-204ENST00000540738 IGHV7-4-1A0A0J9YVY3 117 aa11.35□□□□□ -0.59
COLCA1-204ENST00000540738 EREGO14944 169 aa11.35□□□□□ -0.59
COLCA1-204ENST00000540738 RSPO3Q9BXY4 272 aaPredicted RBP11.35□□□□□ -0.59
COLCA1-204ENST00000540738 PAM16Q9Y3D7 125 aa11.35□□□□□ -0.59
COLCA1-204ENST00000540738 TRAV1-1A0A0B4J248 108 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 CLPSL1A2RUU4 121 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 RIPPLY3P57055 190 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 AGMATQ9BSE5 352 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 CDX1P47902 265 aaPredicted RBP11.34□□□□□ -0.59
COLCA1-204ENST00000540738 POU2AF1Q16633 256 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 TCF23Q7RTU1 214 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 ATP5L2Q7Z4Y8 100 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 DPH3P1Q9H4G8 78 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 NOTCH3Q9UM47 2321 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 A0A0G2JRQ6 117 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 A0A087WWC5 75 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 TCTAP57738 103 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 Q6ZRM9 215 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 ANAPC10Q9UM13 185 aa11.34□□□□□ -0.59
COLCA1-204ENST00000540738 KRTAP27-1Q3LI81 207 aa11.33□□□□□ -0.6
COLCA1-204ENST00000540738 GHRHP01286 108 aa11.33□□□□□ -0.6
COLCA1-204ENST00000540738 ZNF134P52741 427 aa11.33□□□□□ -0.6
COLCA1-204ENST00000540738 HOXD3P31249 432 aaPredicted RBP11.33□□□□□ -0.6
COLCA1-204ENST00000540738 MLANAQ16655 118 aa11.33□□□□□ -0.6
COLCA1-204ENST00000540738 FOXC2Q99958 501 aa11.33□□□□□ -0.6
COLCA1-204ENST00000540738 PRO1933Q9H354 126 aa11.33□□□□□ -0.6
COLCA1-204ENST00000540738 VSIRQ9H7M9 311 aa11.33□□□□□ -0.6
COLCA1-204ENST00000540738 ZNF876PQ49A33 203 aa11.32□□□□□ -0.6
COLCA1-204ENST00000540738 OR5A1Q8NGJ0 315 aa11.32□□□□□ -0.6
COLCA1-204ENST00000540738 Q8TAT8 98 aa11.32□□□□□ -0.6
COLCA1-204ENST00000540738 JKAMPQ9P055 326 aa11.32□□□□□ -0.6
COLCA1-204ENST00000540738 OCC1Q8TAD7 63 aa11.32□□□□□ -0.6
COLCA1-204ENST00000540738 H7C2G1 150 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 SH2D1AO60880 128 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 SEC11AP67812 179 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 PMCHL2Q9BQD1 86 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 CARHSP1Q9Y2V2 147 aaKnown RBP11.31□□□□□ -0.6
COLCA1-204ENST00000540738 RPLP1P05386 114 aaKnown RBP11.31□□□□□ -0.6
COLCA1-204ENST00000540738 DIAPH2-AS1Q14236 149 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 RPP25LQ8N5L8 163 aaKnown RBP11.31□□□□□ -0.6
COLCA1-204ENST00000540738 DNLZQ5SXM8 178 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 TRAV9-2A0A087WT02 112 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 C19orf84I3L1E1 186 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 IGFL4Q6B9Z1 124 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 NUDT10Q8NFP7 164 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 ATP6V0BQ99437 205 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 IGHV3-73A0A0B4J1V6 119 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 MYCNOSP40205 109 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 NUDT11Q96G61 164 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 TPSG1Q9NRR2 321 aa11.31□□□□□ -0.6
COLCA1-204ENST00000540738 TP53BP1Q12888 1972 aaPredicted RBP11.3□□□□□ -0.6
COLCA1-204ENST00000540738 DNAL4O96015 105 aa11.3□□□□□ -0.6
COLCA1-204ENST00000540738 WT1-ASQ06250 92 aa11.3□□□□□ -0.6
COLCA1-204ENST00000540738 SPINK13Q1W4C9 94 aa11.3□□□□□ -0.6
COLCA1-204ENST00000540738 SLC25A34Q6PIV7 304 aa11.3□□□□□ -0.6
COLCA1-204ENST00000540738 C8orf86Q6ZUL3 223 aa11.3□□□□□ -0.6
COLCA1-204ENST00000540738 SMIM6P0DI80 62 aa11.3□□□□□ -0.6
COLCA1-204ENST00000540738 CDKN1BP46527 198 aa11.3□□□□□ -0.6
COLCA1-204ENST00000540738 RBMY1BA6NDE4 496 aaKnown RBP11.3□□□□□ -0.6
COLCA1-204ENST00000540738 RBMY1EA6NEQ0 496 aaKnown RBP11.3□□□□□ -0.6
COLCA1-204ENST00000540738 CD5LO43866 347 aa11.3□□□□□ -0.6
COLCA1-204ENST00000540738 RBMY1DP0C7P1 496 aaKnown RBP11.3□□□□□ -0.6
COLCA1-204ENST00000540738 RBMY1A1P0DJD3 496 aaKnown RBP11.3□□□□□ -0.6
COLCA1-204ENST00000540738 RBMY1CP0DJD4 496 aa11.3□□□□□ -0.6
COLCA1-204ENST00000540738 SLAQ13239 276 aa11.3□□□□□ -0.6
COLCA1-204ENST00000540738 NPBQ8NG41 125 aa11.3□□□□□ -0.6
COLCA1-204ENST00000540738 SPAG8Q99932 426 aaPredicted RBP11.3□□□□□ -0.6
COLCA1-204ENST00000540738 TEX48A0A1B0GUV7 120 aa11.29□□□□□ -0.6
COLCA1-204ENST00000540738 MRAPQ8TCY5 172 aa11.29□□□□□ -0.6
COLCA1-204ENST00000540738 RMI2Q96E14 147 aa11.29□□□□□ -0.6
COLCA1-204ENST00000540738 LY96Q9Y6Y9 160 aa11.29□□□□□ -0.6
COLCA1-204ENST00000540738 TMEM89A2RUT3 159 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms