RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 NPIPB11E5RHQ5 1161 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 H3BML4 177 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 TM4SF5O14894 197 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 GFRA3O60609 400 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 CA6P23280 308 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 GNG5P63218 68 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 PRR20EP86478 221 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 PRR20CP86479 221 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 PRR20DP86480 221 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 PRR20BP86481 221 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 PRR20AP86496 221 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 HES1Q14469 280 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 H2BFWTQ7Z2G1 175 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 MAPKAPK5-AS1Q8N8E1 139 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 PIEZO1Q92508 2521 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 TMEM150CB9EJG8 249 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 GRNP28799 593 aaKnown RBP7.55□□□□□ -1.2
CLIP1-214ENST00000540539 UBE2D3P61077 147 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 UBE2D2P62837 147 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 SRSF2Q01130 221 aaKnown RBP7.55□□□□□ -1.2
CLIP1-214ENST00000540539 GTSCR1Q86UQ5 136 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 TMEM219Q86XT9 240 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 WFDC3Q8IUB2 231 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 GATD1Q8NB37 220 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 ASCL2Q99929 193 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 EPDR1Q9UM22 224 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 A0A1W2PQD3 144 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 FRG2CA6NGY1 282 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 HOXA3O43365 443 aaPredicted RBP7.55□□□□□ -1.2
CLIP1-214ENST00000540539 HBDP02042 147 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 BRWD1-AS2P59051 145 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 RPS28P62857 69 aaKnown RBP7.55□□□□□ -1.2
CLIP1-214ENST00000540539 PSMG4Q5JS54 123 aa7.55□□□□□ -1.2
CLIP1-214ENST00000540539 LOC389332A0A1B0GUA5 103 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 PEX7O00628 323 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 DNPH1O43598 174 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 TCL1BO95988 128 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 CECR9P0C854 216 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 FGF12P61328 243 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 TNFAIP6P98066 277 aaPredicted RBP7.54□□□□□ -1.2
CLIP1-214ENST00000540539 FOXC1Q12948 553 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 ZNF672Q499Z4 452 aaPredicted RBP7.54□□□□□ -1.2
CLIP1-214ENST00000540539 C10orf126Q8N4M7 172 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 PRSS22Q9GZN4 317 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 SPTBN2O15020 2390 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 TRBV6-6A0A0A6YYG2 114 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 LINC01549A6NIU2 74 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 C17orf98A8MV24 154 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 J3QLI3 93 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 M0R2P5 195 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 C4orf26Q17RF5 130 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 CT83Q5H943 113 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 ZNRF2Q8NHG8 242 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 FAM57AQ8TBR7 257 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 SPTSSAQ969W0 71 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 ZMAT4Q9H898 229 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 OCIAD1Q9NX40 245 aa7.54□□□□□ -1.2
CLIP1-214ENST00000540539 FER1L5A0AVI2 2057 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 MYMXA0A1B0GTQ4 84 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 SHISA9B4DS77 424 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 SYNGR3O43761 229 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 OR2H2O95918 312 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 HLA-DRB4P13762 266 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 HRCT1Q6UXD1 115 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 ZNF488Q96MN9 340 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 NABP2Q9BQ15 211 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 FAM173AQ9BQD7 235 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 HLA-DRB4X5D2U9 266 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 SRRM4A7MD48 611 aaKnown RBP7.53□□□□□ -1.2
CLIP1-214ENST00000540539 P01737 135 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 CD7P09564 240 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 SCGB1C2P0DMR2 95 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 PAX8Q06710 450 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 SRSF9Q13242 221 aaKnown RBP eCLIP7.53□□□□□ -1.2
CLIP1-214ENST00000540539 HES3Q5TGS1 186 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 ZNF493Q6ZR52 646 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 TRPT1Q86TN4 253 aaKnown RBP7.53□□□□□ -1.2
CLIP1-214ENST00000540539 OR4C13Q8NGP0 309 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 DUX3Q96PT4 197 aa7.53□□□□□ -1.2
CLIP1-214ENST00000540539 TET2Q6N021 2002 aaPredicted RBP7.53□□□□□ -1.2
CLIP1-214ENST00000540539 SPTBN4Q9H254 2564 aa7.52□□□□□ -1.2
CLIP1-214ENST00000540539 RBAKDNA6NC62 111 aa7.52□□□□□ -1.21
CLIP1-214ENST00000540539 CCL4P13236 92 aa7.52□□□□□ -1.21
CLIP1-214ENST00000540539 DUX4L9Q6RFH8 374 aaPredicted RBP7.52□□□□□ -1.21
CLIP1-214ENST00000540539 C3orf22Q8N5N4 141 aa7.52□□□□□ -1.21
CLIP1-214ENST00000540539 NPIPB3Q92617 1050 aa7.52□□□□□ -1.21
CLIP1-214ENST00000540539 GFRA4Q9GZZ7 299 aa7.52□□□□□ -1.21
CLIP1-214ENST00000540539 CALYQ9NYX4 217 aa7.52□□□□□ -1.21
CLIP1-214ENST00000540539 OVOL3O00110 214 aa7.52□□□□□ -1.21
CLIP1-214ENST00000540539 CRYGSP22914 178 aa7.52□□□□□ -1.21
CLIP1-214ENST00000540539 UBE2L3P68036 154 aaKnown RBP7.52□□□□□ -1.21
CLIP1-214ENST00000540539 UTF1Q5T230 341 aa7.52□□□□□ -1.21
CLIP1-214ENST00000540539 TRGV9Q99603 122 aa7.52□□□□□ -1.21
CLIP1-214ENST00000540539 IFI27L2Q9H2X8 130 aa7.52□□□□□ -1.21
CLIP1-214ENST00000540539 EML6Q6ZMW3 1958 aa7.51□□□□□ -1.21
CLIP1-214ENST00000540539 AHCTF1Q8WYP5 2266 aa7.51□□□□□ -1.21
CLIP1-214ENST00000540539 C19orf71A6NCJ1 209 aa7.51□□□□□ -1.21
CLIP1-214ENST00000540539 IGKCP01834 107 aa7.51□□□□□ -1.21
CLIP1-214ENST00000540539 EDN2P20800 178 aa7.51□□□□□ -1.21
CLIP1-214ENST00000540539 IL11RAQ14626 422 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms