RNA–Protein interactions for RNA: ENST00000538862.6

CDCA3-207, Transcript of cell division cycle associated 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDCA3, Length 1,943 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-207ENST00000538862 SPATA45Q537H7 98 aa11.52□□□□□ -0.57
CDCA3-207ENST00000538862 LINC00322Q6ZN03 302 aaPredicted RBP11.52□□□□□ -0.57
CDCA3-207ENST00000538862 LHFPL4Q7Z7J7 247 aa11.52□□□□□ -0.57
CDCA3-207ENST00000538862 RASL11BQ9BPW5 248 aa11.52□□□□□ -0.57
CDCA3-207ENST00000538862 UBTD1Q9HAC8 227 aa11.52□□□□□ -0.57
CDCA3-207ENST00000538862 TRBV6-1A0A0K0K1D8 114 aa11.51□□□□□ -0.57
CDCA3-207ENST00000538862 TMEM238C9JI98 176 aa11.51□□□□□ -0.57
CDCA3-207ENST00000538862 LYNX1G3V0Z9 82 aa11.51□□□□□ -0.57
CDCA3-207ENST00000538862 LYNX1P0DP58 116 aa11.51□□□□□ -0.57
CDCA3-207ENST00000538862 COX7A1P24310 79 aa11.51□□□□□ -0.57
CDCA3-207ENST00000538862 LYZP61626 148 aa11.51□□□□□ -0.57
CDCA3-207ENST00000538862 PMCHL1Q16048 86 aa11.51□□□□□ -0.57
CDCA3-207ENST00000538862 LEMD1Q68G75 181 aa11.51□□□□□ -0.57
CDCA3-207ENST00000538862 DAZAP1Q96EP5 407 aaKnown RBP11.51□□□□□ -0.57
CDCA3-207ENST00000538862 WNT10AQ9GZT5 417 aa11.51□□□□□ -0.57
CDCA3-207ENST00000538862 RNF24Q9Y225 148 aa11.51□□□□□ -0.57
CDCA3-207ENST00000538862 NPIPB6E9PJ23 425 aa11.5□□□□□ -0.57
CDCA3-207ENST00000538862 GOSR1O95249 250 aa11.5□□□□□ -0.57
CDCA3-207ENST00000538862 RBPMS2Q6ZRY4 209 aaKnown RBP11.5□□□□□ -0.57
CDCA3-207ENST00000538862 TCF24Q7RTU0 167 aa11.5□□□□□ -0.57
CDCA3-207ENST00000538862 OR8B3Q8NGG8 313 aa11.5□□□□□ -0.57
CDCA3-207ENST00000538862 OR8B2Q96RD0 313 aa11.5□□□□□ -0.57
CDCA3-207ENST00000538862 SSBP4Q9BWG4 385 aaPredicted RBP11.5□□□□□ -0.57
CDCA3-207ENST00000538862 MED13LQ71F56 2210 aa11.5□□□□□ -0.57
CDCA3-207ENST00000538862 LIPFP07098 398 aa11.5□□□□□ -0.57
CDCA3-207ENST00000538862 HOXB4P17483 251 aaPredicted RBP11.5□□□□□ -0.57
CDCA3-207ENST00000538862 GPR6P46095 362 aaPredicted RBP11.5□□□□□ -0.57
CDCA3-207ENST00000538862 PLGLAQ15195 96 aa11.5□□□□□ -0.57
CDCA3-207ENST00000538862 KLHDC1Q8N7A1 406 aa11.5□□□□□ -0.57
CDCA3-207ENST00000538862 LY6G5BQ8NDX9 201 aa11.5□□□□□ -0.57
CDCA3-207ENST00000538862 GTSF1Q8WW33 167 aa11.5□□□□□ -0.57
CDCA3-207ENST00000538862 UQCR10Q9UDW1 63 aa11.5□□□□□ -0.57
CDCA3-207ENST00000538862 FAM181BA6NEQ2 426 aa11.49□□□□□ -0.57
CDCA3-207ENST00000538862 M0R2Z0 102 aa11.49□□□□□ -0.57
CDCA3-207ENST00000538862 PRB3Q04118 309 aaPredicted RBP11.49□□□□□ -0.57
CDCA3-207ENST00000538862 Q86TA4 180 aa11.49□□□□□ -0.57
CDCA3-207ENST00000538862 OR2D3Q8NGH3 330 aa11.49□□□□□ -0.57
CDCA3-207ENST00000538862 ACANP16112 2415 aa11.49□□□□□ -0.57
CDCA3-207ENST00000538862 H3BTX0 84 aa11.48□□□□□ -0.57
CDCA3-207ENST00000538862 CNIH1O95406 144 aa11.48□□□□□ -0.57
CDCA3-207ENST00000538862 IGKV1-17P01599 117 aa11.48□□□□□ -0.57
CDCA3-207ENST00000538862 IGLC2P0DOY2 106 aa11.48□□□□□ -0.57
CDCA3-207ENST00000538862 IGLC3P0DOY3 106 aa11.48□□□□□ -0.57
CDCA3-207ENST00000538862 ZNF672Q499Z4 452 aaPredicted RBP11.48□□□□□ -0.57
CDCA3-207ENST00000538862 RNASE8Q8TDE3 154 aaKnown RBP11.48□□□□□ -0.57
CDCA3-207ENST00000538862 K7EIM0 57 aa11.48□□□□□ -0.57
CDCA3-207ENST00000538862 IGLV2-11P01706 119 aa11.48□□□□□ -0.57
CDCA3-207ENST00000538862 HTR1DP28221 377 aa11.48□□□□□ -0.57
CDCA3-207ENST00000538862 RNASEKQ6P5S7 137 aaKnown RBP11.48□□□□□ -0.57
CDCA3-207ENST00000538862 LYPD1Q8N2G4 141 aa11.48□□□□□ -0.57
CDCA3-207ENST00000538862 OR11H6Q8NGC7 330 aa11.48□□□□□ -0.57
CDCA3-207ENST00000538862 SHANK2-AS3Q9BTD1 123 aa11.48□□□□□ -0.57
CDCA3-207ENST00000538862 FLNAP21333 2647 aaKnown RBP11.47□□□□□ -0.57
CDCA3-207ENST00000538862 TIMM23O14925 209 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 FOXA3P55318 350 aaPredicted RBP11.47□□□□□ -0.57
CDCA3-207ENST00000538862 BPIFA4PQ86YQ2 179 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 NPBQ8NG41 125 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 CHCHD1Q96BP2 118 aaKnown RBP11.47□□□□□ -0.57
CDCA3-207ENST00000538862 PGLYRP4Q96LB8 373 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 DPM3Q9P2X0 92 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 ONECUT1Q9UBC0 465 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 C20orf202A1L168 122 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 H3BRN7 92 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 NBR2O15453 112 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 GOLT1AQ6ZVE7 132 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 TMEM75Q8N9X5 138 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 OR4F17Q8NGA8 305 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 NDFIP1Q9BT67 221 aa11.47□□□□□ -0.57
CDCA3-207ENST00000538862 TRBV19A0A075B6N1 114 aa11.46□□□□□ -0.58
CDCA3-207ENST00000538862 C2orf70A6NJV1 201 aa11.46□□□□□ -0.58
CDCA3-207ENST00000538862 HAX1O00165 279 aa11.46□□□□□ -0.58
CDCA3-207ENST00000538862 NDUFA3O95167 84 aa11.46□□□□□ -0.58
CDCA3-207ENST00000538862 CEACAM3P40198 252 aa11.46□□□□□ -0.58
CDCA3-207ENST00000538862 DEFB113Q30KQ7 82 aa11.46□□□□□ -0.58
CDCA3-207ENST00000538862 LDLRAD2Q5SZI1 272 aa11.46□□□□□ -0.58
CDCA3-207ENST00000538862 EBLN2Q6P2I7 272 aa11.46□□□□□ -0.58
CDCA3-207ENST00000538862 S100A7AQ86SG5 101 aa11.46□□□□□ -0.58
CDCA3-207ENST00000538862 EXOC3-AS1Q8N2X6 119 aa11.46□□□□□ -0.58
CDCA3-207ENST00000538862 URB1-AS1Q96HZ7 61 aa11.46□□□□□ -0.58
CDCA3-207ENST00000538862 ZFP30Q9Y2G7 519 aa11.46□□□□□ -0.58
CDCA3-207ENST00000538862 TRAV8-1A0A0A6YYK1 113 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 K7EQM0 130 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 TCF21O43680 179 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 COL5A1-AS1Q5SY13 56 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 PRNTQ86SH4 94 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 CIARTQ8N365 385 aaPredicted RBP11.45□□□□□ -0.58
CDCA3-207ENST00000538862 ZNF491Q8N8L2 437 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 CFHR4Q92496 578 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 CCL19Q99731 98 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 FOXC2Q99958 501 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 RAB1BQ9H0U4 201 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 TRAV30A0A087WSZ9 112 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 M0R1W7 72 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 TXN2Q99757 166 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 C1RLQ9NZP8 487 aa11.45□□□□□ -0.58
CDCA3-207ENST00000538862 MTORP42345 2549 aa11.44□□□□□ -0.58
CDCA3-207ENST00000538862 ABCA1O95477 2261 aa11.44□□□□□ -0.58
CDCA3-207ENST00000538862 TRAV9-2A0A087WT02 112 aa11.44□□□□□ -0.58
CDCA3-207ENST00000538862 WI2-2373I1.2A0A1W2PRP0 233 aa11.44□□□□□ -0.58
CDCA3-207ENST00000538862 APOHP02749 345 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms