RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 COX11Q9Y6N1 276 aa10.37□□□□□ -0.75
LDLR-203ENST00000535915 NCBP2LA6PVI3 153 aaKnown RBP10.37□□□□□ -0.75
LDLR-203ENST00000535915 M0R2Z0 102 aa10.37□□□□□ -0.75
LDLR-203ENST00000535915 FCGR2BP31994 310 aaPredicted RBP10.37□□□□□ -0.75
LDLR-203ENST00000535915 SOX21Q9Y651 276 aaPredicted RBP10.37□□□□□ -0.75
LDLR-203ENST00000535915 SVEP1Q4LDE5 3571 aa10.37□□□□□ -0.75
LDLR-203ENST00000535915 M0QZ24 198 aa10.37□□□□□ -0.75
LDLR-203ENST00000535915 HLA-DRB1P01911 266 aa10.37□□□□□ -0.75
LDLR-203ENST00000535915 PRB4P10163 310 aaPredicted RBP10.37□□□□□ -0.75
LDLR-203ENST00000535915 Q71RC1 249 aaPredicted RBP10.37□□□□□ -0.75
LDLR-203ENST00000535915 IGLC2P0DOY2 106 aa10.36□□□□□ -0.75
LDLR-203ENST00000535915 VMO1Q7Z5L0 202 aa10.36□□□□□ -0.75
LDLR-203ENST00000535915 NPIPB6E9PJ23 425 aa10.36□□□□□ -0.75
LDLR-203ENST00000535915 K7EQM0 130 aa10.36□□□□□ -0.75
LDLR-203ENST00000535915 IGLC3P0DOY3 106 aa10.36□□□□□ -0.75
LDLR-203ENST00000535915 HOXB4P17483 251 aaPredicted RBP10.36□□□□□ -0.75
LDLR-203ENST00000535915 FOXA3P55318 350 aaPredicted RBP10.36□□□□□ -0.75
LDLR-203ENST00000535915 ARPC1AQ92747 370 aa10.36□□□□□ -0.75
LDLR-203ENST00000535915 ASCL2Q99929 193 aa10.36□□□□□ -0.75
LDLR-203ENST00000535915 TRAV30A0A087WSZ9 112 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 WI2-2373I1.2A0A1W2PRP0 233 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 PPBPP02775 128 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 MFAP4P55083 255 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 SIGLEC15Q6ZMC9 328 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 DYNAPQ8N1N2 210 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 SPTBN4Q9H254 2564 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 IGLV11-55A0A075B6I3 123 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 FAM231BA6NCW3 169 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 FAM181BA6NEQ2 426 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 CHEK1O14757 476 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 CTRLP40313 264 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 Q56UQ5 140 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 CCDC144NLQ6NUI1 221 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 ZNF562Q6V9R5 426 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 KIR3DL3Q8N743 410 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 TMEM75Q8N9X5 138 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 ZC2HC1AQ96GY0 325 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 FANCD2OSQ96PS1 177 aa10.35□□□□□ -0.75
LDLR-203ENST00000535915 MED13LQ71F56 2210 aa10.34□□□□□ -0.75
LDLR-203ENST00000535915 NPIPB5A8MRT5 1133 aa10.34□□□□□ -0.75
LDLR-203ENST00000535915 VAMP3Q15836 100 aa10.34□□□□□ -0.75
LDLR-203ENST00000535915 BCL6BQ8N143 479 aaPredicted RBP10.34□□□□□ -0.75
LDLR-203ENST00000535915 LYPD1Q8N2G4 141 aa10.34□□□□□ -0.75
LDLR-203ENST00000535915 TRBV6-1A0A0K0K1D8 114 aa10.34□□□□□ -0.75
LDLR-203ENST00000535915 NDPQ00604 133 aa10.34□□□□□ -0.75
LDLR-203ENST00000535915 LCN12Q6JVE5 192 aa10.34□□□□□ -0.75
LDLR-203ENST00000535915 ATOH7Q8N100 152 aa10.34□□□□□ -0.75
LDLR-203ENST00000535915 KLHDC1Q8N7A1 406 aa10.34□□□□□ -0.75
LDLR-203ENST00000535915 ZNF414Q96IQ9 312 aa10.34□□□□□ -0.75
LDLR-203ENST00000535915 IGHV2-70DA0A0C4DH43 119 aa10.33□□□□□ -0.76
LDLR-203ENST00000535915 MRPS12O15235 138 aaKnown RBP10.33□□□□□ -0.76
LDLR-203ENST00000535915 S100A7AQ86SG5 101 aa10.33□□□□□ -0.76
LDLR-203ENST00000535915 PSG8Q9UQ74 426 aa10.33□□□□□ -0.76
LDLR-203ENST00000535915 HIVEP3Q5T1R4 2406 aa10.33□□□□□ -0.76
LDLR-203ENST00000535915 M0R3E3 92 aa10.33□□□□□ -0.76
LDLR-203ENST00000535915 IGHV3-23P01764 117 aa10.33□□□□□ -0.76
LDLR-203ENST00000535915 PSG3Q16557 428 aa10.33□□□□□ -0.76
LDLR-203ENST00000535915 EBLN2Q6P2I7 272 aa10.33□□□□□ -0.76
LDLR-203ENST00000535915 URB1-AS1Q96HZ7 61 aa10.33□□□□□ -0.76
LDLR-203ENST00000535915 ZFP36P26651 326 aaKnown RBP10.32□□□□□ -0.76
LDLR-203ENST00000535915 MAJINQ3KP22 176 aa10.32□□□□□ -0.76
LDLR-203ENST00000535915 CLEC2AQ6UVW9 174 aa10.32□□□□□ -0.76
LDLR-203ENST00000535915 C1orf122Q6ZSJ8 110 aa10.32□□□□□ -0.76
LDLR-203ENST00000535915 TTC9CQ8N5M4 171 aa10.32□□□□□ -0.76
LDLR-203ENST00000535915 TMEM190Q8WZ59 177 aa10.32□□□□□ -0.76
LDLR-203ENST00000535915 C21orf62Q9NYP8 219 aa10.32□□□□□ -0.76
LDLR-203ENST00000535915 THYN1Q9P016 225 aa10.32□□□□□ -0.76
LDLR-203ENST00000535915 PMCHL1Q16048 86 aa10.32□□□□□ -0.76
LDLR-203ENST00000535915 FAM162BQ5T6X4 162 aa10.32□□□□□ -0.76
LDLR-203ENST00000535915 AAMDCQ9H7C9 122 aa10.32□□□□□ -0.76
LDLR-203ENST00000535915 LOC102724200A0A096LPH7 203 aaPredicted RBP10.31□□□□□ -0.76
LDLR-203ENST00000535915 ZNF785A8K8V0 405 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 F8W735 103 aaPredicted RBP10.31□□□□□ -0.76
LDLR-203ENST00000535915 HAX1O00165 279 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 NDUFS7O75251 213 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 TSPOP30536 169 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 C16orf54Q6UWD8 224 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 DTX2Q86UW9 622 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 SH2D7A6NKC9 451 aaPredicted RBP10.31□□□□□ -0.76
LDLR-203ENST00000535915 Q8N6K4 173 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 ZNF48Q96MX3 618 aaPredicted RBP10.31□□□□□ -0.76
LDLR-203ENST00000535915 CSTL1Q9H114 145 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 CLEC5AQ9NY25 188 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.31□□□□□ -0.76
LDLR-203ENST00000535915 A0A1B0GUT8 65 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 OR2T8A6NH00 312 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 C2orf70A6NJV1 201 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 OOSP1A8MZH6 123 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 APOHP02749 345 aaPredicted RBP10.31□□□□□ -0.76
LDLR-203ENST00000535915 PDE6HQ13956 83 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 MINOS1Q5TGZ0 78 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 MINOS1-NBL1R4GNA1 71 aa10.31□□□□□ -0.76
LDLR-203ENST00000535915 A0A1W2PPR1 153 aa10.3□□□□□ -0.76
LDLR-203ENST00000535915 NDFIP1Q9BT67 221 aa10.3□□□□□ -0.76
LDLR-203ENST00000535915 CST9LQ9H4G1 147 aa10.3□□□□□ -0.76
LDLR-203ENST00000535915 ARMS2P0C7Q2 107 aa10.3□□□□□ -0.76
LDLR-203ENST00000535915 OCIAD2Q56VL3 154 aa10.3□□□□□ -0.76
LDLR-203ENST00000535915 ERASQ7Z444 233 aa10.3□□□□□ -0.76
LDLR-203ENST00000535915 CHCHD1Q96BP2 118 aaKnown RBP10.3□□□□□ -0.76
LDLR-203ENST00000535915 C8orf49Q96NF6 230 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms