RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 APOHP02749 345 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-233ENST00000535896 IGLC1P0CG04 106 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 LOXP28300 417 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-233ENST00000535896 CAMPP49913 170 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 PTTG1IPP53801 180 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 ADORA2A-AS1P86434 159 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 HIST1H1AQ02539 215 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-233ENST00000535896 PLGLAQ15195 96 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 MRGPRG-AS1Q2M3A8 158 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 SAPCD1Q5SSQ6 148 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 LINC01545Q5VT33 79 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 CFAP161Q6P656 301 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 ZNF841Q6ZN19 808 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 COX8CQ7Z4L0 72 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 BPIFA4PQ86YQ2 179 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 RPRMLQ8N4K4 120 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 DEFB108BQ8NET1 73 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 OR1B1Q8NGR6 318 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 GTSF1Q8WW33 167 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 IGFBPL1Q8WX77 278 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 URB1-AS1Q96HZ7 61 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 LINC00479Q96M42 142 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 KRTAP4-11Q9BYQ6 195 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 RAB1BQ9H0U4 201 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 JKAMPQ9P055 326 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 Q9UFV3 132 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 SIGLEC9Q9Y336 463 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 CADP27708 2225 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 FLNBO75369 2602 aaKnown RBP5.03□□□□□ -1.6
SYNE1-233ENST00000535896 BAHCC1Q9P281 2608 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 HECTD1Q9ULT8 2610 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 TRAV34A0A0B4J273 112 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 VWC2LB2RUY7 222 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 E7EUB6 86 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 TCF21O43680 179 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 SCGB2A1O75556 95 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 IGLV1-47P01700 117 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 CCL3L1P16619 93 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 ORM2P19652 201 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 CDKN1BP46527 198 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 GNG5P63218 68 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 SEC11AP67812 179 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 SSBP2P81877 361 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-233ENST00000535896 SRSF2Q01130 221 aaKnown RBP5.03□□□□□ -1.6
SYNE1-233ENST00000535896 MLANAQ16655 118 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 FBLN7Q53RD9 439 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 PPP1R27Q86WC6 154 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 DEFB125Q8N687 156 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 OR1N2Q8NGR9 330 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 OR10AG1Q8NH19 301 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 ITLN2Q8WWU7 325 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-233ENST00000535896 RASL11BQ9BPW5 248 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 SHANK2-AS3Q9BTD1 123 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 SLC25A39Q9BZJ4 359 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-233ENST00000535896 GSX1Q9H4S2 264 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-233ENST00000535896 SCRT2Q9NQ03 307 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 AP5S1Q9NUS5 200 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 ICE1Q9Y2F5 2266 aa5.03□□□□□ -1.6
SYNE1-233ENST00000535896 TRBV19A0A075B6N1 114 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 SH2D7A6NKC9 451 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-233ENST00000535896 TEX22C9J3V5 150 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 H3BRN7 92 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 I3L2K1 104 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 CD5LO43866 347 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 IGLV2-11P01706 119 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 PPBPP02775 128 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 HTR1DP28221 377 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 TFPI2P48307 235 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 HINT1P49773 126 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-233ENST00000535896 CCL8P80075 99 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 FBXL19-AS1Q494R0 122 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 C10orf55Q5SWW7 151 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 LCN12Q6JVE5 192 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 TCF24Q7RTU0 167 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 BLNKQ8WV28 456 aa5.02□□□□□ -1.61
SYNE1-233ENST00000535896 RNASE6Q93091 150 aaKnown RBP5.02□□□□□ -1.61
SYNE1-233ENST00000535896 MRPL36Q9P0J6 103 aaKnown RBP5.02□□□□□ -1.61
SYNE1-233ENST00000535896 ADGRG4Q8IZF6 3080 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 MALRD1Q5VYJ5 2156 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 UNC79Q9P2D8 2635 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 IGHV1-3A0A0C4DH29 117 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 FAM90A27PA6NNH2 459 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 SHISA9B4DS77 424 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 B9A039 149 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 BUB1B-PAK6H3BSN5 160 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 SIVA1O15304 175 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 CCL25O15444 150 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 FCN3O75636 299 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 CT45A10P0DMU9 189 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 COX8AP10176 69 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 PSG1P11464 419 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 CEACAM3P40198 252 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 PSG9Q00887 426 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 BSPH1Q075Z2 132 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 SRSF1Q07955 248 aaKnown RBP eCLIP5.01□□□□□ -1.61
SYNE1-233ENST00000535896 FAM27E3Q08E93 113 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 PSG3Q16557 428 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 LGALS9BQ3B8N2 356 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 BVES-AS1Q5T3Y7 98 aa5.01□□□□□ -1.61
SYNE1-233ENST00000535896 LGALS9CQ6DKI2 356 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms