RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ZNF561-AS1K7EIQ3 104 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 CELA2AP08217 269 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 ATP5EP56381 51 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 LINC00643Q86TS7 51 aa9.12□□□□□ -0.95
LIMCH1-217ENST00000512946 FOXI1Q12951 378 aa9.11□□□□□ -0.95
LIMCH1-217ENST00000512946 AMTNQ6UX39 209 aa9.11□□□□□ -0.95
LIMCH1-217ENST00000512946 BRK1Q8WUW1 75 aa9.11□□□□□ -0.95
LIMCH1-217ENST00000512946 IGHV3OR16-8A0A075B7F1 116 aa9.11□□□□□ -0.95
LIMCH1-217ENST00000512946 UQCRQO14949 82 aa9.11□□□□□ -0.95
LIMCH1-217ENST00000512946 RGPD1P0DJD0 1748 aa9.11□□□□□ -0.95
LIMCH1-217ENST00000512946 SDHAF1A6NFY7 115 aa9.11□□□□□ -0.95
LIMCH1-217ENST00000512946 SEC16AO15027 2179 aa9.11□□□□□ -0.95
LIMCH1-217ENST00000512946 TRAV25A0A0B4J276 109 aa9.11□□□□□ -0.95
LIMCH1-217ENST00000512946 NDUFS7O75251 213 aa9.11□□□□□ -0.95
LIMCH1-217ENST00000512946 CCL19Q99731 98 aa9.11□□□□□ -0.95
LIMCH1-217ENST00000512946 C7orf69Q9H7B7 122 aa9.11□□□□□ -0.95
LIMCH1-217ENST00000512946 CXCL5P42830 114 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 C5orf64Q2M2E5 130 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 ZFP2Q6ZN57 461 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 LCNL1Q6ZST4 164 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 FAM168AQ92567 244 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 MCRIP2Q9BUT9 160 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 TRAV12-1A0A0B4J245 112 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 IGKV1-12A0A0C4DH73 117 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 IGKV1D-12P01611 117 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 CFHR2P36980 270 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 QRFPP83859 136 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 ZFP36L1Q07352 338 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 LINC01620Q4KN68 170 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 NHSL1Q5SYE7 1610 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 IGHV1-2P23083 117 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 MUSTN1Q8IVN3 82 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 RNASE8Q8TDE3 154 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 ABCA3Q99758 1704 aa9.1□□□□□ -0.95
LIMCH1-217ENST00000512946 M0R1W7 72 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 VSIG2Q96IQ7 327 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 H0YJW9 148 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 CR1LQ2VPA4 569 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 DEFB123Q8N688 67 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 CKAP5Q14008 2032 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 KIF13BQ9NQT8 1826 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 NDUFB1O75438 58 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 SCN8AQ9UQD0 1980 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 IGHV1-3A0A0C4DH29 117 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 DSCR9P59020 149 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 RPL15P61313 204 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 C20orf173Q96LM9 149 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 CACNA1DQ01668 2161 aa9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 SNRNP200O75643 2136 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-217ENST00000512946 IGLV3-12A0A075B6K2 115 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 TRBV19A0A075B6N1 114 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 TMEM213A2RRL7 107 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 Q8TAT8 98 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 RMI2Q96E14 147 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 SIGLEC9Q9Y336 463 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 SCN3AQ9NY46 2000 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 TINCRA0A1B0GVN0 87 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 SLC22A18ASQ8N1D0 253 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 LYPD6BQ8NI32 183 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 TRBV10-2A0A0K0K1G8 114 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 K7EM74 188 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 AKAP11Q9UKA4 1901 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 THBDP07204 575 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 IGHV1-8P0DP01 117 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 LENEPQ9Y5L5 61 aa9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 DDX60LQ5H9U9 1706 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-217ENST00000512946 MYO7AQ13402 2215 aa9.07□□□□□ -0.96
LIMCH1-217ENST00000512946 E9PQ18 207 aa9.07□□□□□ -0.96
LIMCH1-217ENST00000512946 DAZ1Q9NQZ3 744 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-217ENST00000512946 K7ERJ3 54 aa9.07□□□□□ -0.96
LIMCH1-217ENST00000512946 BSPH1Q075Z2 132 aa9.07□□□□□ -0.96
LIMCH1-217ENST00000512946 LY75O60449 1722 aa9.07□□□□□ -0.96
LIMCH1-217ENST00000512946 PRSS57Q6UWY2 283 aa9.07□□□□□ -0.96
LIMCH1-217ENST00000512946 SAP25Q8TEE9 199 aa9.07□□□□□ -0.96
LIMCH1-217ENST00000512946 PRR25Q96S07 402 aa9.07□□□□□ -0.96
LIMCH1-217ENST00000512946 FAM201AQ5SY85 155 aa9.06□□□□□ -0.96
LIMCH1-217ENST00000512946 ATP5EP2Q5VTU8 51 aa9.06□□□□□ -0.96
LIMCH1-217ENST00000512946 SH2D6Q7Z4S9 175 aa9.06□□□□□ -0.96
LIMCH1-217ENST00000512946 PRDM6Q9NQX0 595 aa9.06□□□□□ -0.96
LIMCH1-217ENST00000512946 LYRM9A8MSI8 78 aa9.06□□□□□ -0.96
LIMCH1-217ENST00000512946 SCN1AP35498 2009 aa9.06□□□□□ -0.96
LIMCH1-217ENST00000512946 GLI3P10071 1580 aa9.06□□□□□ -0.96
LIMCH1-217ENST00000512946 PFN2P35080 140 aa9.06□□□□□ -0.96
LIMCH1-217ENST00000512946 RNASE6Q93091 150 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-217ENST00000512946 A0A087WWL8 130 aa9.06□□□□□ -0.96
LIMCH1-217ENST00000512946 NDUFC2-KCTD14E9PQ53 114 aa9.06□□□□□ -0.96
LIMCH1-217ENST00000512946 SMRP1Q8NCR6 262 aa9.06□□□□□ -0.96
LIMCH1-217ENST00000512946 A0A1B0GUS0 222 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 DAD1P61803 113 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 MARF1Q9Y4F3 1742 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 SEC61GP60059 68 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 VWC2Q2TAL6 325 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 C11orf44Q8N8P7 122 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 BAALCQ8WXS3 180 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 NDUFC1O43677 76 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 ZNF883P0CG24 379 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 ANXA2RQ3ZCQ2 193 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 C10orf55Q5SWW7 151 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 Q6ZUT4 128 aa9.05□□□□□ -0.96
LIMCH1-217ENST00000512946 NRAPQ86VF7 1730 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms