RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 ARPINQ7Z6K5 226 aa0.31□□□□□ -2.36
SCN1A-206ENST00000491429 LRRC18Q8N456 261 aa0.31□□□□□ -2.36
SCN1A-206ENST00000491429 PPTC7Q8NI37 304 aa0.31□□□□□ -2.36
SCN1A-206ENST00000491429 HYLS1Q96M11 299 aa0.31□□□□□ -2.36
SCN1A-206ENST00000491429 MYH10P35580 1976 aa0.31□□□□□ -2.36
SCN1A-206ENST00000491429 FAT4Q6V0I7 4981 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 ABCA13Q86UQ4 5058 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 VWFP04275 2813 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 SPTBN4Q9H254 2564 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 RYR3Q15413 4870 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 TRAV27A0A087WT01 109 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 ODAMA1E959 279 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 C9orf170A2RU37 121 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 C5orf67F2Z3F1 127 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 E2F6O75461 281 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 CD14P08571 375 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 CAPZBP47756 277 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 KLRD1Q13241 179 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 EIF3IQ13347 325 aaKnown RBP0.3□□□□□ -2.36
SCN1A-206ENST00000491429 SNCBQ16143 134 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 OR10AC1Q8NH08 325 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 OR10AG1Q8NH19 301 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 PAIP2Q9BPZ3 127 aaKnown RBP0.3□□□□□ -2.36
SCN1A-206ENST00000491429 OR2J1Q9GZK6 312 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 CACYBPQ9HB71 228 aaKnown RBP0.3□□□□□ -2.36
SCN1A-206ENST00000491429 PRNDQ9UKY0 176 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 PYCARDQ9ULZ3 195 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 ALPK3Q96L96 1907 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 RFX7Q2KHR2 1363 aa0.3□□□□□ -2.36
SCN1A-206ENST00000491429 HEATR1Q9H583 2144 aaKnown RBP0.29□□□□□ -2.36
SCN1A-206ENST00000491429 MGAMO43451 1857 aa0.29□□□□□ -2.36
SCN1A-206ENST00000491429 hDV103S1A0JD37 113 aa0.29□□□□□ -2.36
SCN1A-206ENST00000491429 H7C1C5 153 aa0.29□□□□□ -2.36
SCN1A-206ENST00000491429 AIPO00170 330 aa0.29□□□□□ -2.36
SCN1A-206ENST00000491429 RER1O15258 196 aa0.29□□□□□ -2.36
SCN1A-206ENST00000491429 SPINT3P49223 89 aa0.29□□□□□ -2.36
SCN1A-206ENST00000491429 LCN6P62502 163 aa0.29□□□□□ -2.36
SCN1A-206ENST00000491429 MSMO1Q15800 293 aa0.29□□□□□ -2.36
SCN1A-206ENST00000491429 HACD4Q5VWC8 232 aa0.29□□□□□ -2.36
SCN1A-206ENST00000491429 SMR3AQ99954 134 aa0.29□□□□□ -2.36
SCN1A-206ENST00000491429 TCEAL2Q9H3H9 227 aaPredicted RBP0.29□□□□□ -2.36
SCN1A-206ENST00000491429 SSPOA2VEC9 5147 aa0.29□□□□□ -2.36
SCN1A-206ENST00000491429 MYH7BA7E2Y1 1941 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 PTPN13Q12923 2485 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 COL6A5A8TX70 2615 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 A0A096LPI6 279 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 TRBV30A0A0K0K1B3 111 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 RIIAD1A6NNX1 92 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 K7EIL1 84 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 ATP5HO75947 161 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 ATG12O94817 140 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 IFNA14P01570 189 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 TRGC2P03986 189 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 KDELR1P24390 212 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 PHBP35232 272 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 FXYD4P59646 89 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 VBP1P61758 197 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 CIRBPQ14011 172 aaKnown RBP0.28□□□□□ -2.36
SCN1A-206ENST00000491429 KRTAP20-1Q3LI63 56 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 SCGB2B2Q4G0G5 96 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 AKR1C8PQ5T2L2 129 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 Q86TA4 180 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 PXT1Q8NFP0 134 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 CHMP6Q96FZ7 201 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 GPX7Q96SL4 187 aaPredicted RBP0.28□□□□□ -2.36
SCN1A-206ENST00000491429 MAP1LC3BQ9GZQ8 125 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 SS18L2Q9UHA2 77 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 SSR3Q9UNL2 185 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 ASB4Q9Y574 426 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 BSNQ9UPA5 3926 aa0.28□□□□□ -2.36
SCN1A-206ENST00000491429 ADGRL3Q9HAR2 1447 aa0.28□□□□□ -2.37
SCN1A-206ENST00000491429 CITO14578 2027 aa0.28□□□□□ -2.37
SCN1A-206ENST00000491429 NSD1Q96L73 2696 aaPredicted RBP0.27□□□□□ -2.37
SCN1A-206ENST00000491429 ZFC3H1O60293 1989 aaKnown RBP0.27□□□□□ -2.37
SCN1A-206ENST00000491429 ZNF727A8MUV8 499 aa0.27□□□□□ -2.37
SCN1A-206ENST00000491429 IFNA4P05014 189 aa0.27□□□□□ -2.37
SCN1A-206ENST00000491429 OGNP20774 298 aaKnown RBP0.27□□□□□ -2.37
SCN1A-206ENST00000491429 SPINK7P58062 85 aa0.27□□□□□ -2.37
SCN1A-206ENST00000491429 C6orf52Q5T4I8 152 aa0.27□□□□□ -2.37
SCN1A-206ENST00000491429 DHRS4L2Q6PKH6 230 aa0.27□□□□□ -2.37
SCN1A-206ENST00000491429 PBDC1Q9BVG4 233 aa0.27□□□□□ -2.37
SCN1A-206ENST00000491429 HSPB8Q9UJY1 196 aa0.27□□□□□ -2.37
SCN1A-206ENST00000491429 UNC13CQ8NB66 2214 aa0.27□□□□□ -2.37
SCN1A-206ENST00000491429 MYO5AQ9Y4I1 1855 aaKnown RBP0.27□□□□□ -2.37
SCN1A-206ENST00000491429 HYDINQ4G0P3 5121 aa0.26□□□□□ -2.37
SCN1A-206ENST00000491429 HIST1H2BKO60814 126 aa0.26□□□□□ -2.37
SCN1A-206ENST00000491429 APOA2P02652 100 aa0.26□□□□□ -2.37
SCN1A-206ENST00000491429 HIST1H2BJP06899 126 aa0.26□□□□□ -2.37
SCN1A-206ENST00000491429 IDO1P14902 403 aa0.26□□□□□ -2.37
SCN1A-206ENST00000491429 PPP1R2P41236 205 aa0.26□□□□□ -2.37
SCN1A-206ENST00000491429 ZNF137PP52743 207 aa0.26□□□□□ -2.37
SCN1A-206ENST00000491429 FOXA3P55318 350 aaPredicted RBP0.26□□□□□ -2.37
SCN1A-206ENST00000491429 OCIAD2Q56VL3 154 aa0.26□□□□□ -2.37
SCN1A-206ENST00000491429 LIMD2Q9BT23 127 aa0.26□□□□□ -2.37
SCN1A-206ENST00000491429 LYRM2Q9NU23 88 aaPredicted RBP0.26□□□□□ -2.37
SCN1A-206ENST00000491429 RNF11Q9Y3C5 154 aa0.26□□□□□ -2.37
SCN1A-206ENST00000491429 BCL9O00512 1426 aa0.26□□□□□ -2.37
SCN1A-206ENST00000491429 PLXNA4Q9HCM2 1894 aa0.26□□□□□ -2.37
SCN1A-206ENST00000491429 ASCC3Q8N3C0 2202 aaKnown RBP0.26□□□□□ -2.37
SCN1A-206ENST00000491429 SETD2Q9BYW2 2564 aaPredicted RBP0.26□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms