RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 OR2H1Q9GZK4 316 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 CST11Q9H112 138 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM133Q9H2Q1 129 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 MS4A6AQ9H2W1 248 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 BANF2Q9H503 90 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 PLEKHF2Q9H8W4 249 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 ST20Q9HBF5 79 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SPANXA1Q9NS26 97 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 FAM206AQ9NX38 181 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 TVP23BQ9NYZ1 205 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 TP73-AS1Q9UF72 201 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 PRO0628Q9UI54 55 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF257Q9Y2Q1 563 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 NOP16Q9Y3C1 178 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 MED31Q9Y3C7 131 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 TRAPPC1Q9Y5R8 145 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 OBSL1O75147 1896 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SCN8AQ9UQD0 1980 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 MYH4Q9Y623 1939 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 MYO5AQ9Y4I1 1855 aaKnown RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 KNL1Q8NG31 2342 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 TRBV6-7A0A0A0MS04 114 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 BORCS7-ASMTA0A0B4J1R7 106 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 A0A0B4J2E0 115 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 FAM236AA0A1B0GUQ0 79 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 FAM236BA0A1B0GV22 79 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 A0A1B0GX12 115 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 A0A1B0GX51 115 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 DUXBA0A1W2PPF3 345 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 A0A1W2PPM0 123 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 WI2-2373I1.2A0A1W2PRP0 233 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 IRGMA1A4Y4 181 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 MEIS3P1A6NDR6 274 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 FAM24AA6NFZ4 105 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 A8MT66 165 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF736B4DX44 427 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 C3orf84H3BNL1 204 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 SIRPB1O00241 398 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 PLPP1O14494 284 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 ISLRO14498 428 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 NPFFO15130 113 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 RER1O15258 196 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 PGLYRP1O75594 196 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 GCM2O75603 506 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 NDUFA7O95182 113 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 OR2H2O95918 312 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 CA2P00918 260 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 OXTP01178 125 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 IGLV3-19P01714 112 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 IGKV3-11P04433 115 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 IGHV4-34P06331 123 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 DBIP07108 87 aaKnown RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 CRYGDP07320 174 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 IL3P08700 152 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 LINC00869P0C866 280 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 C3orf79P0CE67 100 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 IGLC6P0CF74 106 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 RBMY1A1P0DJD3 496 aaKnown RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 PRB4P10163 310 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 FABP2P12104 132 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 IGLL1P15814 213 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF43P17038 809 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 IGHV1-2P23083 117 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 CRYBB3P26998 211 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 FAUP35544 74 aaKnown RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 G6PCP35575 357 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF93P35789 620 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 CA7P43166 264 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 PPICP45877 212 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 GZMMP51124 257 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 INSL3P51460 131 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 SGSHP51688 502 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 RAB10P61026 200 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 RND3P61587 244 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 PPP1CAP62136 330 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 LCN6P62502 163 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 RPS28P62857 69 aaKnown RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 SEC11AP67812 179 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 TNFAIP6P98066 277 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 HLA-DRB5Q30154 266 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 DEFB133Q30KQ1 61 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF791Q3KP31 576 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 DMRTC1Q5HYR2 192 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 FAM27D1Q5T7N8 215 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 MRPL54Q6P161 138 aaKnown RBP1.48□□□□□ -2.17
HMGB1-208ENST00000490788 SLC25A34Q6PIV7 304 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 ACP7Q6ZNF0 438 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 Q6ZSR3 168 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 Q6ZT83 130 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 LINC00336Q6ZUF6 198 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF550Q7Z398 422 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 FAM19A1Q7Z5A9 133 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 SPATA12Q7Z6I5 190 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 PPP1R27Q86WC6 154 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 SLC35F2Q8IXU6 374 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM86AQ8N2M4 240 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 KRTCAP2Q8N6L1 136 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 NPWQ8N729 165 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM229BQ8NBD8 167 aa1.48□□□□□ -2.17
HMGB1-208ENST00000490788 FDCSPQ8NFU4 85 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms