RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 NLRC5Q86WI3 1866 aa13.32□□□□□ -0.28
COL7A1-210ENST00000487017 ZNF492Q9P255 531 aa13.32□□□□□ -0.28
COL7A1-210ENST00000487017 SRRM4A7MD48 611 aaKnown RBP13.32□□□□□ -0.28
COL7A1-210ENST00000487017 C20orf144Q9BQM9 153 aa13.32□□□□□ -0.28
COL7A1-210ENST00000487017 LSM4Q9Y4Z0 139 aaKnown RBP13.32□□□□□ -0.28
COL7A1-210ENST00000487017 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.32□□□□□ -0.28
COL7A1-210ENST00000487017 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.32□□□□□ -0.28
COL7A1-210ENST00000487017 A0A087WX48 190 aa13.31□□□□□ -0.28
COL7A1-210ENST00000487017 SMKR1H3BMG3 65 aa13.31□□□□□ -0.28
COL7A1-210ENST00000487017 IGKV1-39P01597 117 aa13.31□□□□□ -0.28
COL7A1-210ENST00000487017 IGKV1D-39P04432 117 aa13.31□□□□□ -0.28
COL7A1-210ENST00000487017 PDE6HQ13956 83 aa13.31□□□□□ -0.28
COL7A1-210ENST00000487017 PLEKHB2Q96CS7 222 aa13.31□□□□□ -0.28
COL7A1-210ENST00000487017 RCHY1Q96PM5 261 aa13.31□□□□□ -0.28
COL7A1-210ENST00000487017 KIR3DS1Q14943 382 aa13.31□□□□□ -0.28
COL7A1-210ENST00000487017 TMEM155Q4W5P6 130 aa13.31□□□□□ -0.28
COL7A1-210ENST00000487017 A0A1B0GUS0 222 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 VCYO14598 125 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 PAX4O43316 350 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 HIST1H4AP62805 103 aaKnown RBP13.3□□□□□ -0.28
COL7A1-210ENST00000487017 ZNF876PQ49A33 203 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 MORN3Q6PF18 240 aaPredicted RBP13.3□□□□□ -0.28
COL7A1-210ENST00000487017 DTX2Q86UW9 622 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 C18orf32Q8TCD1 76 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 PROK2Q9HC23 129 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 CD5LO43866 347 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 RPL35AP18077 110 aaKnown RBP13.3□□□□□ -0.28
COL7A1-210ENST00000487017 ATXN8Q156A1 80 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 TMEM75Q8N9X5 138 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 CYYR1Q96J86 154 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 MCRIP2Q9BUT9 160 aaKnown RBP13.3□□□□□ -0.28
COL7A1-210ENST00000487017 ARMS2P0C7Q2 107 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 PRTN3P24158 256 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 COL8A2P25067 703 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 ZC2HC1BQ5TFG8 222 aa13.3□□□□□ -0.28
COL7A1-210ENST00000487017 Q6ZS92 163 aa13.29□□□□□ -0.28
COL7A1-210ENST00000487017 GTSF1LQ9H1H1 148 aa13.29□□□□□ -0.28
COL7A1-210ENST00000487017 C14orf178Q8N769 122 aaPredicted RBP13.29□□□□□ -0.28
COL7A1-210ENST00000487017 CSTL1Q9H114 145 aa13.29□□□□□ -0.28
COL7A1-210ENST00000487017 NDUFA4L2Q9NRX3 87 aa13.29□□□□□ -0.28
COL7A1-210ENST00000487017 ZNRD1Q9P1U0 126 aa13.29□□□□□ -0.28
COL7A1-210ENST00000487017 TRGV1A0A0A0MS02 117 aa13.29□□□□□ -0.28
COL7A1-210ENST00000487017 FAM231BA6NCW3 169 aa13.29□□□□□ -0.28
COL7A1-210ENST00000487017 TMEM249Q2WGJ8 235 aa13.29□□□□□ -0.28
COL7A1-210ENST00000487017 PRADC1Q9BSG0 188 aa13.29□□□□□ -0.28
COL7A1-210ENST00000487017 FAM223BA6NKX1 122 aa13.28□□□□□ -0.28
COL7A1-210ENST00000487017 IGHV2-5P01817 119 aa13.28□□□□□ -0.28
COL7A1-210ENST00000487017 CT83Q5H943 113 aa13.28□□□□□ -0.28
COL7A1-210ENST00000487017 DEFB121Q5J5C9 76 aa13.28□□□□□ -0.28
COL7A1-210ENST00000487017 FAM223AQ8IWN6 122 aa13.28□□□□□ -0.28
COL7A1-210ENST00000487017 USMG5Q96IX5 58 aa13.28□□□□□ -0.28
COL7A1-210ENST00000487017 LAMTOR3Q9UHA4 124 aa13.28□□□□□ -0.28
COL7A1-210ENST00000487017 PLXNA2O75051 1894 aa13.28□□□□□ -0.28
COL7A1-210ENST00000487017 DSCR9P59020 149 aa13.28□□□□□ -0.28
COL7A1-210ENST00000487017 BRD3OSQ6XYD6 125 aa13.28□□□□□ -0.28
COL7A1-210ENST00000487017 WDR86Q86TI4 376 aa13.28□□□□□ -0.28
COL7A1-210ENST00000487017 ZNF48Q96MX3 618 aaPredicted RBP13.27□□□□□ -0.28
COL7A1-210ENST00000487017 COX11Q9Y6N1 276 aa13.27□□□□□ -0.28
COL7A1-210ENST00000487017 TEX43Q6ZNM6 134 aa13.27□□□□□ -0.28
COL7A1-210ENST00000487017 CHAC1Q9BUX1 264 aa13.27□□□□□ -0.28
COL7A1-210ENST00000487017 NCOR1P1Q9H4R4 102 aa13.27□□□□□ -0.28
COL7A1-210ENST00000487017 H3BUX3 64 aa13.27□□□□□ -0.29
COL7A1-210ENST00000487017 ZFAND6Q6FIF0 208 aa13.27□□□□□ -0.29
COL7A1-210ENST00000487017 FCN3O75636 299 aa13.27□□□□□ -0.29
COL7A1-210ENST00000487017 ERCC8Q13216 396 aa13.27□□□□□ -0.29
COL7A1-210ENST00000487017 RSPO1Q2MKA7 263 aaPredicted RBP13.27□□□□□ -0.29
COL7A1-210ENST00000487017 C1orf122Q6ZSJ8 110 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 ZNF833PQ6ZTB9 187 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 DLX4Q92988 240 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-210ENST00000487017 WIPF3A6NGB9 483 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 TNFRSF6BO95407 300 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 IGHV2-70P01814 119 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 GAGE2BQ13066 116 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 GAGE2EQ4V326 116 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 ZNF625Q96I27 306 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-210ENST00000487017 GAGE2DQ9UEU5 116 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 AKAP6Q13023 2319 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 CDK2AP2O75956 126 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 GATA4P43694 442 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 Q6ZR03 302 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 Q8TCH9 128 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 MGAMO43451 1857 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 ESDP10768 282 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 YPEL3P61236 119 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-210ENST00000487017 V9GYV3 84 aa13.26□□□□□ -0.29
COL7A1-210ENST00000487017 KIAA2026Q5HYC2 2103 aa13.25□□□□□ -0.29
COL7A1-210ENST00000487017 IGLV3-1P01715 115 aa13.25□□□□□ -0.29
COL7A1-210ENST00000487017 E7EQL1 145 aa13.25□□□□□ -0.29
COL7A1-210ENST00000487017 UBE2E2Q96LR5 201 aa13.25□□□□□ -0.29
COL7A1-210ENST00000487017 C17orf58Q2M2W7 97 aa13.25□□□□□ -0.29
COL7A1-210ENST00000487017 SNHG12Q9BXW3 62 aa13.25□□□□□ -0.29
COL7A1-210ENST00000487017 GAGE12BA1L429 117 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 CEP250Q9BV73 2442 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 TMEM213A2RRL7 107 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 ZNF503-AS2A6NEH8 195 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 INS-IGF2F8WCM5 200 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 INSP01308 110 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 STPG4Q8N801 248 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 PRSS46E5RG02 174 aa13.24□□□□□ -0.29
COL7A1-210ENST00000487017 IL15RAQ13261 267 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms